View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_15 (Length: 294)
Name: NF18873_low_15
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 8548364 - 8548621
Alignment:
| Q |
19 |
taattttcttcctttatctcactcatattgaaggaacaaaattaaatattcttccnnnnnnnnnnnngaaatctcggtattccacaacctcttgtcttgt |
118 |
Q |
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| T |
8548364 |
taattttcttcctttatctcactcatattgaaggaacaaaattaaatattcttcctttttcttttttgaaatcttagtattccacaacctctcgtcttgt |
8548463 |
T |
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| Q |
119 |
aatatcaaaatacacatatcaacaagaagtctttgcctaatatggtttaaattcataccaaatggaccaacttgcattgacaattaaaaaatacaattac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548464 |
aatatcaaaatacacatatcaacaagaagtctttgcctaatatggtttaaattcataccaaatggaccaacttgcattgacaattaaaaaatacaattac |
8548563 |
T |
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| Q |
219 |
aagaattgaaaagaatactctaaagagagattaagggtaaaataataggggtggaaat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548564 |
aagaattgaaaagaatactctaaagagagattaagggtaaaataataggggtggaaat |
8548621 |
T |
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