View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18873_low_16 (Length: 270)

Name: NF18873_low_16
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18873_low_16
NF18873_low_16
[»] chr1 (2 HSPs)
chr1 (58-253)||(44827976-44828171)
chr1 (1-43)||(44827914-44827956)
[»] chr5 (3 HSPs)
chr5 (61-249)||(8205310-8205500)
chr5 (169-237)||(8225182-8225250)
chr5 (1-42)||(8205516-8205557)
[»] chr2 (2 HSPs)
chr2 (61-249)||(31569857-31570047)
chr2 (1-42)||(31570064-31570105)
[»] chr8 (5 HSPs)
chr8 (58-247)||(2822784-2822972)
chr8 (1-43)||(2822725-2822767)
chr8 (187-237)||(9578791-9578841)
chr8 (132-249)||(9635643-9635762)
chr8 (187-237)||(28861039-28861089)
[»] chr7 (2 HSPs)
chr7 (63-248)||(38369280-38369461)
chr7 (1-43)||(38369479-38369521)
[»] scaffold0380 (1 HSPs)
scaffold0380 (154-228)||(620-696)
[»] chr3 (2 HSPs)
chr3 (160-228)||(29109822-29109892)
chr3 (160-249)||(18370403-18370494)
[»] chr4 (1 HSPs)
chr4 (180-232)||(35105460-35105511)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 44827976 - 44828171
Alignment:
Q  58 ctaacatcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44827976 ctaacatcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttg 44828075  T
Q  158 gagagaaaggattttgtgtggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctcttcctta 253  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||| ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  44828076 gagagaaaggattttgtggggtccacatatttttagtctctcttttctatttctctttacttccaaacaggagaacttcaatttctctcttcctta 44828171  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44827914 - 44827956
Alignment:
Q  1 ttctcctaagttgactttcaaattatataaagttgacggtggg 43  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  44827914 ttctcctaaattcactttcaaattatataaagttgacggtggg 44827956  T

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Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 8205500 - 8205310
Alignment:
Q  61 acatcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttggag 160  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  8205500 acatcataagagatacaaaattaactaaattggactaggggcatagaaggaatacacaaaaatatcactgatctccttcactttcttctcaactttggag 8205401  T
Q  161 agaaaggattt--tgtgtggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctcttc 249  Q
    |||||||||||  |||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||    
T  8205400 agaaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaacaggagaacttcactctctctcttc 8205310  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 8225182 - 8225250
Alignment:
Q  169 ttttgtgtggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttca 237  Q
    ||||||| || |||||  |||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  8225182 ttttgtggggcccacagctttttagtctctctcccctatttctcttcactaccaaacaggagaagttca 8225250  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8205557 - 8205516
Alignment:
Q  1 ttctcctaagttgactttcaaattatataaagttgacggtgg 42  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  8205557 ttctcctaaattcactttcaaattatataaagttgacggtgg 8205516  T

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Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 31570047 - 31569857
Alignment:
Q  61 acatcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttggag 160  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31570047 acatcataagagatacaaaattaactaaattggactaggggcatagaaggaatacacaaaaatatcactaatctccttcactttcttctcaactttggag 31569948  T
Q  161 agaaaggattt--tgtgtggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctcttc 249  Q
    ||||| |||||  |||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||| || ||||||| | |||||||||    
T  31569947 agaaaagattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaacatgacaacttcactctctctcttc 31569857  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31570105 - 31570064
Alignment:
Q  1 ttctcctaagttgactttcaaattatataaagttgacggtgg 42  Q
    ||||||||| || ||||| |||||||||||||||||||||||    
T  31570105 ttctcctaaattcacttttaaattatataaagttgacggtgg 31570064  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 247
Target Start/End: Original strand, 2822784 - 2822972
Alignment:
Q  58 ctaacatcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttg 157  Q
    |||||||||||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  2822784 ctaacatcataagagacacaaaattaactaaattggactaagg-cataaaaggaatacacaaaaatatcactaatctccttcactttcttcttaactttg 2822882  T
Q  158 gagagaaaggattttgtgt--ggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctct 247  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||| | |||||||    
T  2822883 gagagaaagggttttgtgtggggtccacatatttttagtctctct--cctatttctcttcactaccaaccaggagaacttcactctctctct 2822972  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2822725 - 2822767
Alignment:
Q  1 ttctcctaagttgactttcaaattatataaagttgacggtggg 43  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  2822725 ttctcctaaattcactttcaaattatataaagttgacggtggg 2822767  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 9578841 - 9578791
Alignment:
Q  187 tttttagtctctcttccctaattctcttcactaccaaacaggagaacttca 237  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  9578841 tttttagcctctcttccctatttctcttcactatcaaacaggagaaattca 9578791  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 249
Target Start/End: Complemental strand, 9635762 - 9635643
Alignment:
Q  132 tctccttcactttcttctcgactttggagagaaaggattttgtgtggt--ccacatatttttagtctctcttccctaattctcttcactaccaaacagga 229  Q
    ||||||||  ||||||||| | | ||| ||||||| || ||||||||   |||||  |||||||||||||| ||||  |||||||| |||||||||||||    
T  9635762 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggacccacagctttttagtctctctcccctgtttctcttctctaccaaacagga 9635663  T
Q  230 gaacttcaatttctctcttc 249  Q
    ||| || | | |||||||||    
T  9635662 gaagtttactatctctcttc 9635643  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 28861039 - 28861089
Alignment:
Q  187 tttttagtctctcttccctaattctcttcactaccaaacaggagaacttca 237  Q
    ||||||||| |||| ||||| ||||||||||||| ||||||||||| ||||    
T  28861039 tttttagtcgctctcccctatttctcttcactactaaacaggagaagttca 28861089  T

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Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 38369461 - 38369280
Alignment:
Q  63 atcataaaagacacaaaattaactaaattggactaggggcataaaaagaatacacaaaaatatcactaatctccttcactttcttctcgactttggagag 162  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||| || |||||      |||||||||||||||||||||||||||||| |||||||||||    
T  38369461 atcataagagatacaaaattaactacattggactaggggcatagaaggaata------aatatcactaatctccttcactttcttctcaactttggagag 38369368  T
Q  163 aaaggattt--tgtgtggtccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctctt 248  Q
    |||||||||  |||| ||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||    
T  38369367 aaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactaccaaataggagaacttcactctctctctt 38369280  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38369521 - 38369479
Alignment:
Q  1 ttctcctaagttgactttcaaattatataaagttgacggtggg 43  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  38369521 ttctcctaaattcactttcaaattatataaagttgacggtggg 38369479  T

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Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 620 - 696
Alignment:
Q  154 tttggagagaaaggattttgtgtggtccacatat--ttttagtctctcttccctaattctcttcactaccaaacagg 228  Q
    ||||| ||||||| |||||||||||  | |||||  ||||| ||||||||| ||| |||||||||||||||||||||    
T  620 tttggggagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactaccaaacagg 696  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 29109822 - 29109892
Alignment:
Q  160 gagaaaggattttgtgtggtccacatat--ttttagtctctcttccctaattctcttcactaccaaacagg 228  Q
    ||||||| |||||||||||  | |||||  ||||| ||||||||| ||| |||||||||||||||||||||    
T  29109822 gagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactaccaaacagg 29109892  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 18370494 - 18370403
Alignment:
Q  160 gagaaaggattttgtgtggt--ccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaacttcaatttctctcttc 249  Q
    ||||||| |||||||||||   |||||| ||||||||||| || ||||  |||||||| ||||||| |||||||| || | | |||||||||    
T  18370494 gagaaagaattttgtgtgggacccacatctttttagtctcactcccctgtttctcttctctaccaatcaggagaagtttactatctctcttc 18370403  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 35105511 - 35105460
Alignment:
Q  180 ccacatatttttagtctctcttccctaattctcttcactaccaaacaggagaa 232  Q
    ||||||||||||||||||||||||||  |||||| || || ||||||||||||    
T  35105511 ccacatatttttagtctctcttccctctttctctgcatta-caaacaggagaa 35105460  T

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