View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_17 (Length: 253)
Name: NF18873_low_17
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 14353823 - 14353600
Alignment:
| Q |
17 |
actttcctgtcacattcttaagattgaaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaat |
116 |
Q |
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| T |
14353823 |
actttcctgtcacattcttaagattgaaaggtcccaatttaggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaat |
14353724 |
T |
|
| Q |
117 |
gatagtatccacaacaccaaccggaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaactnnnnnnnnnnntttaaa |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14353723 |
gatagtatccacaacaccaaccgaaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaactaaaaaaaaaaa-ttaaa |
14353625 |
T |
|
| Q |
217 |
caattaataccacaaaacatatatt |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
14353624 |
caattaataccacaaaacatatatt |
14353600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 43884088 - 43884243
Alignment:
| Q |
43 |
aaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaatgatagtatccacaacaccaaccggaa |
142 |
Q |
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|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | | ||||||||||| |||||||||| ||||||| | |
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| T |
43884088 |
aaaggtcccaatttgggacgataaatctcatacttggacaaatcaccatattttagttttgccgaaa-agtaatgatagcatccacaacatcaaccggca |
43884186 |
T |
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| Q |
143 |
aatatttcaccattcgcatcccttggtgaattatttctctattgaagacatgaaact |
199 |
Q |
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|||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
43884187 |
aataattcaccattcgcatcccttgacgaatcatttctctactgaagacatgaaact |
43884243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 12381004 - 12380827
Alignment:
| Q |
17 |
actttcctgtcacattcttaagattgaaaggtcctaatttgggacgataaatcccatacttagacaaatcaccatattttagttttgcccatagagtaat |
116 |
Q |
| |
|
|||||||||| | ||| || |||| |||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||||||| |
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| T |
12381004 |
actttcctgtaatatttttgagatgtaaaggtccctctttgggacgataaattccatatttagacagatcaccatattttagttttgccaaaagagtaat |
12380905 |
T |
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| Q |
117 |
gatagtatccacaacaccaaccggaaaatatttcaccattcgcatcccttggtgaattatttctctattgaagacatg |
194 |
Q |
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| |||||||||| | |||||| ||||| |||||||| ||||| ||||||||||| ||||| ||| |||||||||| |
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| T |
12380904 |
gtatgtatccacaatatgaaccggcaaatacttcaccatacgcattccttggtgaatcatttccctagtgaagacatg |
12380827 |
T |
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