View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18873_low_3 (Length: 472)
Name: NF18873_low_3
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 1608864 - 1608417
Alignment:
| Q |
17 |
aaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatctttactcttcaataactttctcaaagctcataaacttcttagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| | |
|
|
| T |
1608864 |
aaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatcttcactcttcaataactttatcaaagctaataaacttcttatt |
1608765 |
T |
|
| Q |
117 |
cctcttaatcattatctcctaccttttatattcccttagtgatggttagtcatagcagtgatggtgtaagtgacaatgctatggttaccggcttccaatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608764 |
cctcttaatcattatctcctaccttttctattcccttagtgatggttagtcatagcagtgatggtgtaagtgacaatgctatggttaccggcttccaatg |
1608665 |
T |
|
| Q |
217 |
cataaaggttcaacattttagctcattttgcttatgatagtttgcgatgattcaaattaaattctagggtaaagggcttatgtggtttagttgatttaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608664 |
cataaaggttcaacattttagctcattttgcttatgatagtttgtgatgattcaaattaaattctagggtaaagggcttatgtggtttagttgatttagg |
1608565 |
T |
|
| Q |
317 |
catgtatgtttgtcacaaatgtattttctttactactcaagattggagtttgatgaagtcagaaagaatatatctgtgcaaaatttgatattttgttgca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608564 |
catgtatgtttgtcacaaatgtattttctttactactcaaaattggagtttgatgaagtcagaaagaatatatctgtgcaaaatttgatattttgttgca |
1608465 |
T |
|
| Q |
417 |
aaaatgttaaacttctcctgttctttgcattgacagtttatctctgtt |
464 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1608464 |
aaaaagttaaacttctcctgttctttgcattgacagtttatctttgtt |
1608417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 11091455 - 11091533
Alignment:
| Q |
77 |
actcttcaataactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttag |
155 |
Q |
| |
|
||||||| || ||||||||||||||||| | ||||| |||||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
11091455 |
actcttccatcactttctcaaagctcatcactttcttcttcctcttaatcacaatctcttaccttttttattctcttag |
11091533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University