View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_5 (Length: 431)
Name: NF18873_low_5
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 23534290 - 23533888
Alignment:
| Q |
16 |
gtatgtactatgggtttgatttaaggttttaatcacaaaatatttcaagtgttatgatgttgttatgtgagctatgctgctatgcgagtgatattgtttt |
115 |
Q |
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| T |
23534290 |
gtatgtgctatgggtttgatttaaggttttaatcacaaaatattttaagtgttatgatgttgttatgtgagctttgctgctatgctagtgatattgtttt |
23534191 |
T |
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| Q |
116 |
attttattttcataagtatttcaagttttaattatgttgttatgtgagctatgctgttatatgagtgatattgatttatgaattttgtttaatcttatta |
215 |
Q |
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| T |
23534190 |
atttt-----cataagtatttcaagttttaattatgttgttatgtgagctatgctgttatatgagtgatattgatttatgaattttgtttaatcttatta |
23534096 |
T |
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| Q |
216 |
ttagtgttacggttgtacgatttacactttccgatgattttgtgtgaaatctcgactttaacttaccttggtttgctccattttttagtgtgatactata |
315 |
Q |
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| T |
23534095 |
ttagtgttacgattgtacgatttacactttccgatgattttgcgtgaaatctcgactttaacttactttggtttgctccattttttagcgtgatactata |
23533996 |
T |
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| Q |
316 |
tgtaatattaatatgtggtttatctttcttggaaatggcctgatattccattctacttgtaatttgctgtttcaggcccacgttgaacaatggattgatt |
415 |
Q |
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| T |
23533995 |
tgtaatattaatatgttgtttatctttcttggaaatggcctgatattccattctacttgtaatttgctgtttcaggcccacgttgaacaatggattgatt |
23533896 |
T |
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| Q |
416 |
tttcttct |
423 |
Q |
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| T |
23533895 |
tttcttct |
23533888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 30623029 - 30622971
Alignment:
| Q |
29 |
gtttgatttaaggttttaatcacaaaa-tatttcaagtgttatgatgttgttatgtgag |
86 |
Q |
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| T |
30623029 |
gtttgatttaacgtttgaatcatacaagtatttcaagtgttatgttgttgttatgtgag |
30622971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 15329924 - 15329987
Alignment:
| Q |
24 |
tatgggtttgatttaaggttttaatcaca-aaatatttcaagtgttatgatgttgttatgtgag |
86 |
Q |
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| T |
15329924 |
tatgagtttgatttaatgttttaattacataaatatttcaagtgttatgttgttgatatgtgag |
15329987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 30526251 - 30526203
Alignment:
| Q |
56 |
tatttcaagtgttatgatgttgttatgtgagctatgctgctatgcgagt |
104 |
Q |
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| T |
30526251 |
tatttcaagtgttatgctgctgttatgtgagctatgttggtatgtgagt |
30526203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 4322804 - 4322856
Alignment:
| Q |
188 |
gatttatgaattttgtttaatcttattattagtgttacggttgtacgatttac |
240 |
Q |
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| T |
4322804 |
gatttatgaattttgtgtaatcttacaattagtgttacgattgcatgatttac |
4322856 |
T |
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