View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_6 (Length: 395)
Name: NF18873_low_6
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 38162041 - 38161708
Alignment:
| Q |
9 |
gaagaatatgtgcaaagatatttgcttttagtggtataggagtaacatgcaatggccaagtatgtgcaatgtccttatcttagttaacaagaaaggaaat |
108 |
Q |
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| T |
38162041 |
gaagaaaatgtgcacagatatttgcttttactggtatagtagtaacatgcaatggccaagtatgtgcaatggccttatcttagttaacaagaaaggaaat |
38161942 |
T |
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| Q |
109 |
cttttatattagtatcaaatgtcaaagaagagaattggcaatatattatataatnnnnnnnnnnnntagtattgacaaacatgaacaagtttgctataaa |
208 |
Q |
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| T |
38161941 |
cttttatattagtatcaaatgtcaaagaagagaattggcaatatattatataataaaaacaaaaaatagtatcgacaaacatgaacaagtttgctataaa |
38161842 |
T |
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| Q |
209 |
atgattattaataaatgccatatattgtgccatttcattgagcttccacccatatagcatatgacatccgcagccatgtgcaaacaaccactgcttcaca |
308 |
Q |
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| T |
38161841 |
atgattattaataaatgtcatatattgtgcgatgtca----------------------tatgacatccgcagccatgtgcaaacaaccactgcttcaca |
38161764 |
T |
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| Q |
309 |
gttcacacaagagagatccatattggtgattgttgaacgtggaattaattacaaag |
364 |
Q |
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| T |
38161763 |
gttcacacaagagaggtccatattggtgattgttgaacgtggaattaattacaaag |
38161708 |
T |
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