View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_8 (Length: 370)
Name: NF18873_low_8
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 2353734 - 2353499
Alignment:
| Q |
16 |
attaaattttggtaaaagaaatagacaattaacttggtacttgactagctctccaacacgtctcaacgtcagttgctgccagtaaaagaaaaactggtac |
115 |
Q |
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| T |
2353734 |
attaaattttggtaaaagtaatagacaattaacttggtacttgactagctctccaacacgtctcaacgtcagttgctgccagtaaaagaaaaactggtac |
2353635 |
T |
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| Q |
116 |
attgaatgaatgttgttgaatgaatttcaaactattttcacaattgtatcgtgcataatgcattatgtctctcaataagtatacaatgcattatgtccaa |
215 |
Q |
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| T |
2353634 |
at-gaatgaatgttgttgaatgaatttcaaactattttcacaattgtatcgtgcataatgcattatgtctctcaataagtatacaatgcattatgtccaa |
2353536 |
T |
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| Q |
216 |
catgaccaatttacgatctggcttggaacctctgcat |
252 |
Q |
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| T |
2353535 |
catgaccaatttacgatctggcttggaacctctgcat |
2353499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 2353474 - 2353373
Alignment:
| Q |
253 |
aaagctcaaaagaagagttgctgttctttccgtgaacttacggagaaaatgaacaatgaaagtaatcatgaattcatggttttttgttctgttgttgttg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2353474 |
aaagctcaaaagaagagttgctgttctttccgtgaacttacggagaaaatgaacaatgaaagtaagcatgaattcatggttttttgttctgttgttgttg |
2353375 |
T |
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| Q |
353 |
tt |
354 |
Q |
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| T |
2353374 |
tt |
2353373 |
T |
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