View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18873_low_9 (Length: 340)
Name: NF18873_low_9
Description: NF18873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18873_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 5538572 - 5538377
Alignment:
| Q |
136 |
tgtgaatggaaggtgattcttttgatgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgta------t |
229 |
Q |
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| T |
5538572 |
tgtgaatggaaggtgattcttttgatgtggtcaaggctttgaagtttcctatcgatgatagttcttactttgttttggtgattaatgattgtaagagtct |
5538473 |
T |
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| Q |
230 |
tagatgtttgtattcttcgtttttagtttctcatgtgcgaagagttgtaacgttattgctcattatctagctaagtttgctttagtttcaattgat |
325 |
Q |
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| T |
5538472 |
tagatgtttgttttcttcgtttttagtttctcatgtgcgaagagttgtaacgttattgctcattatctagctaagtttgctttagtttcaattgat |
5538377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 5538626 - 5538572
Alignment:
| Q |
42 |
gacaaatttgaaactattattatgtggtaaaatgaggaaggaaatgagaaactat |
96 |
Q |
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| T |
5538626 |
gacaaatttgaaactattactatgtggtaaaatgaggaaggaaatgagaagctat |
5538572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 314
Target Start/End: Complemental strand, 18927442 - 18927263
Alignment:
| Q |
142 |
tggaaggtgattcttttgatgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgta------ttagatg |
235 |
Q |
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| T |
18927442 |
tggaaggtgattctcttattgtggtcaaggctttgaaggcacatagcaatgacaattcttattttggtttggtgattaatgattgtaagagtcttagttg |
18927343 |
T |
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| Q |
236 |
tttgtattcttcgtttttagtttctcatgtgcgaaga-gttgtaacgttattgctcattatctagctaagtttgctttag |
314 |
Q |
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| T |
18927342 |
tttgttttcttcttttttagtttctcatgtgcgaagaggtggtaactctattgctcatgctttagctaagtttgccttag |
18927263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 316
Target Start/End: Complemental strand, 26195017 - 26194837
Alignment:
| Q |
142 |
tggaaggtgattcttttgatgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgta------ttagatg |
235 |
Q |
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|||||||||||||| || ||||||| |||||||| |||| | || ||||||| ||| ||||||| ||| |||||||||| ||| |||| || |
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| T |
26195017 |
tggaaggtgattctcttaatgtggtaaaggctttaaagtctcatagtgatgataattcatactttgacttgatgattaatgaccgtaagagtcttagttg |
26194918 |
T |
|
| Q |
236 |
tttgtattcttcgtttttagtttctcatgtgcgaagagttgtaacgttattgctcattatctagctaagtttgctttagtt |
316 |
Q |
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|| | |||||| |||||||||||||||| ||||||||||| | ||| |||||||| ||||||||||||||||||||||| |
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| T |
26194917 |
ttaattttcttcatttttagtttctcatgcgcgaagagttggtaagttgttgctcatgatctagctaagtttgctttagtt |
26194837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 325
Target Start/End: Complemental strand, 50732764 - 50732602
Alignment:
| Q |
160 |
atgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgtattagatgtttgtattcttcgtttttagtttc |
259 |
Q |
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| T |
50732764 |
atgtggtgaagactatgaagtcgtctaccgatgataatttttactttggtttggtgattaaaa----tcttagttgtttgctttcttcatttttagtttt |
50732669 |
T |
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| Q |
260 |
tcatgtgcgaagagttg-taacgttattgctcattatctagctaagtttgctttagtttcaattgat |
325 |
Q |
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| T |
50732668 |
tcatgtatgaagagttgataatgatgttgctcatgctctagctaagtttgctttagtttcaattgat |
50732602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 50780091 - 50780253
Alignment:
| Q |
160 |
atgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgtattagatgtttgtattcttcgtttttagtttc |
259 |
Q |
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| T |
50780091 |
atgtggtgaagactatgaagtcgtctaccgatgataatttttactttggtttggtgattaaaa----tcttagttgtttgctttcttcatttttagtttt |
50780186 |
T |
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| Q |
260 |
tcatgtgcgaagagttg-taacgttattgctcattatctagctaagtttgctttagtttcaattgat |
325 |
Q |
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| T |
50780187 |
tcatgtatgaagagttgataatgatgttgctcatgctctagctaagtttgctttagtttcaattgat |
50780253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 37120752 - 37120892
Alignment:
| Q |
142 |
tggaaggtgattcttttgatgtggtcaaggctttgaagttgcctatcgatgatagttcttactttgttttggtgattaatgattgta------ttagatg |
235 |
Q |
| |
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|||||||||||| | || ||||||| |||||||||||| || || |||||| | |||||| |||| |||||||| ||||||||| |||| || |
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| T |
37120752 |
tggaaggtgattatcttaatgtggttaaggctttgaagccgcatagcgatgacaattcttattttggcttggtgatcgatgattgtaggagtcttagttg |
37120851 |
T |
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| Q |
236 |
tttgtattcttcgtttttagtttctcatgtgcgaagagttg |
276 |
Q |
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| T |
37120852 |
tttgttttcttcttttttagtttctcatatgcgaagagttg |
37120892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 2053476 - 2053403
Alignment:
| Q |
242 |
ttcttcgtttttagtttctcatgtgcgaagagtt-gtaacgttattgctcattatctagctaagtttgctttag |
314 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| |
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| T |
2053476 |
ttcttcttttttagtttctcatgtgcgaagagttggtaactctatcgctcatgctctaactaagtttgccttag |
2053403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 45339584 - 45339689
Alignment:
| Q |
210 |
ttggtgattaatgattgtattagatgtttgtattcttcgtttttagtttctcatgtgcgaagagtt-gtaacgttattgctcattatctagctaagtttg |
308 |
Q |
| |
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||||||||||||||||||| || |||||| |||||| | ||||| |||||| ||||||||||| ||| | || |||||||| ||||| ||||||| |
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| T |
45339584 |
ttggtgattaatgattgtaagagtcgtttgttttcttcttctttagcttctcacatgcgaagagttggtatcattgttgctcatgctctagtcaagtttg |
45339683 |
T |
|
| Q |
309 |
ctttag |
314 |
Q |
| |
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|||||| |
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| T |
45339684 |
ctttag |
45339689 |
T |
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