View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_high_1 (Length: 594)
Name: NF18874_high_1
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 89 - 490
Target Start/End: Complemental strand, 41984888 - 41984488
Alignment:
| Q |
89 |
tatctaataaagacatggttccatgagaatataccgcacataattggtttgaacctttggtttattgaaatgccgtgttgattatgattgtccaatcgat |
188 |
Q |
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| T |
41984888 |
tatctaataaagacatggttccatgataatataccacacataattggtttgaacctttggtttattgaaatgccgtgttgattatgattgtccaatcgat |
41984789 |
T |
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| Q |
189 |
agtgaaatacaaaaacacagcaaaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtatagttaggaatgagaacct |
288 |
Q |
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| T |
41984788 |
agtgaaatacaaaaacacagcaaaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtttagttaggaatgagaacct |
41984689 |
T |
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| Q |
289 |
ggacaactctttttcttccttctctcaattgatcaagggtgataactgataaagccatcttgtataaaaagtaatttaagcagtttaatagtttacaact |
388 |
Q |
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| T |
41984688 |
ggacaactctttttcttccttctctcaattgatcaagggtgatagctgataaggccatcttgtat-aaaagtaatttaagcagtttaatagtttacaact |
41984590 |
T |
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| Q |
389 |
acaggaatatcctattgtagtaaaataaattctatggtattctgcttcatattttctgaatcaacccaattatctaacactatctttccttgtcaccttc |
488 |
Q |
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| T |
41984589 |
acaggaatatcctattgtagtaaaataaattctatggtattctgcttcatattttctgaatcaacccaattatctagcactatctttccttgtcaccttc |
41984490 |
T |
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| Q |
489 |
aa |
490 |
Q |
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| T |
41984489 |
aa |
41984488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 211 - 527
Target Start/End: Complemental strand, 41986995 - 41986658
Alignment:
| Q |
211 |
aaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtatagttaggaatgagaacctggacaactctttttcttccttc |
310 |
Q |
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| T |
41986995 |
aaaacatatatgttattattgttctattggaaattataggaaatgtgtgattatatgtatggttaggaatgagaacct-gaaaactc-ttttattccttc |
41986898 |
T |
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| Q |
311 |
tctcaattgatcaagggtgataactgataaagccatcttgtataaaaagtaatttaagcagtttaatagt----------ttacaactacaggaatatcc |
400 |
Q |
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| T |
41986897 |
tttcaattgatcaaggg-------tgataaggtcatcttctataacaagtaacttaatgagtttaatggtttaaagccaattacaactacatgaatagcc |
41986805 |
T |
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| Q |
401 |
tattgtagtaaaataaatt--ctatggtattctgcttcatattttctgaatcaacccaattatcta------------------acactatctttccttg |
480 |
Q |
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| T |
41986804 |
tattgtgatcaaataatttagatattgttctctgcttcatattttctgaatgaacccaattatctaacagtatccaattgtgtgacagtatctttccttg |
41986705 |
T |
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| Q |
481 |
tcaccttcaagagcagaaaattgttaaaccagtatctggccagcatc |
527 |
Q |
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| T |
41986704 |
tcaccttaaagagcataaaattgttaaaccagtatctggccatcatc |
41986658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 41985020 - 41984958
Alignment:
| Q |
14 |
gaacctgtgccatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
76 |
Q |
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| T |
41985020 |
gaacctgtggcatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
41984958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 578
Target Start/End: Complemental strand, 41984479 - 41984431
Alignment:
| Q |
530 |
cataactaaatacagacataatgtggggtctaggattcatataattaac |
578 |
Q |
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| T |
41984479 |
cataactaaatacagacataatgtggggtctaggattcatataattaac |
41984431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 41987571 - 41987517
Alignment:
| Q |
22 |
gccatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
76 |
Q |
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| T |
41987571 |
gccataggactgaggaaagtgcagttgcaacttgcaattgacacagcttatgcag |
41987517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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