View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_high_15 (Length: 255)
Name: NF18874_high_15
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 2392639 - 2392409
Alignment:
| Q |
26 |
ataaactagtgcaccgactattttgatgataaggtatcaccgttctgtgctgcattgcttctcttcttcata-cttcaaactcacgtcatcattcatgag |
124 |
Q |
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| T |
2392639 |
ataaactagtgcaccgactattttgatgataaggtatcaccgttctgtgctgcattgcttctcttctttctaacttcaaactcacgtcatcattcatgag |
2392540 |
T |
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| Q |
125 |
gagtacaagttgattaacgaccgtataaaaatatatcctttataactgttgatgtaatatagaaagaaaagtaattnnnnnnntcaaatgatatgtgtat |
224 |
Q |
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| T |
2392539 |
gagtacaagttgattaacaaccgtataaaaatatatcctttataactgttgatgtaatatagaaagaaaagtaattaaaaaaatcaaatgatatgtgtat |
2392440 |
T |
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| Q |
225 |
tttacctatttccttaaaacatataaactaa |
255 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2392439 |
tttacctatttccttaaaacatataaactaa |
2392409 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 20233351 - 20233383
Alignment:
| Q |
147 |
gtataaaaatatatcctttataactgttgatgt |
179 |
Q |
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| T |
20233351 |
gtataaaaatatatcttttataactgttgatgt |
20233383 |
T |
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