View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_high_16 (Length: 244)
Name: NF18874_high_16
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 14812360 - 14812594
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812360 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
14812459 |
T |
|
| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14812460 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgctttttatagtacttatggaacaaatctt |
14812559 |
T |
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| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
14812560 |
tatcatgcaacaatttgataaacatcatcaccttg |
14812594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15259355 - 15259589
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259355 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
15259454 |
T |
|
| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15259455 |
agtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctt |
15259554 |
T |
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| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
15259555 |
tatcatgcaacaatttgataaacatcatcaccttg |
15259589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14804940 - 14805009
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
70 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||| |||||||| |
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| T |
14804940 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15251934 - 15252003
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaat |
70 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||| |||||||| |
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| T |
15251934 |
agcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17521820 - 17521586
Alignment:
| Q |
1 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521820 |
agcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgcaaatttgtaaccacatactcttttg |
17521721 |
T |
|
| Q |
101 |
agtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521720 |
agtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctt |
17521621 |
T |
|
| Q |
201 |
tatcatgcaacaatttgataaacatcatcaccttg |
235 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
17521620 |
tatcatgcaacaatttgataaacatcaccaccttg |
17521586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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