View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18874_high_5 (Length: 456)
Name: NF18874_high_5
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 34228872 - 34229297
Alignment:
| Q |
10 |
ataattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagagtagtatttggaatactag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34228872 |
ataattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagcgtagtatttggaatactag |
34228971 |
T |
|
| Q |
110 |
atatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcaaaggagacaaaggaaaatggttg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
34228972 |
atatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcagaggagacaaaggaaaatggctg |
34229071 |
T |
|
| Q |
210 |
caatcacaccaaaaccaaggtgtgtataacatgcatgttaatcaattgatagtaattggggagagacattgggatattgacatttgacaaagttcataat |
309 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34229072 |
caatcacaccaaaaccaaggtgtgtttaacatgcatgctaatcaattgatagtaattggagagagacattgggata-------ttgacaaagttcataat |
34229164 |
T |
|
| Q |
310 |
tttcacagatgaaactgcaaactgtatactctattttcgttgtccctttaattcattcgctgtatgaggataagttggtttgggatgaggatcgaaatag |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229165 |
tttcacagatgaaactgcaaactgtatactctattttcgctgtccctttatttcattcgctgcatgaggataagttggtttgggatgaggatcgaaatag |
34229264 |
T |
|
| Q |
410 |
ttgctatttgattaagtcggggtataaactgat |
442 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| |
|
|
| T |
34229265 |
ttgttatttgattaagtcggggtataatctgat |
34229297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 34237494 - 34237548
Alignment:
| Q |
12 |
aattctcaaagcaagatactttcttcacacatattttttcttgaagctgacattagt |
68 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
34237494 |
aattctcaaatcaatatactttctccacacata--ttttcttgaagctgacattagt |
34237548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 46889177 - 46889100
Alignment:
| Q |
93 |
agtatttggaatactagatatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatg |
170 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| ||||| |||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
46889177 |
agtatttggaattctagacatgtgttttcacatgcttgtagatggaggattggtgatggtaagaatgttagaatcatg |
46889100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 42093100 - 42093134
Alignment:
| Q |
118 |
ttttacatggttgtagatggcggattggtgatggt |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
42093100 |
ttttacatggttgtagatggaggattggtgatggt |
42093134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University