View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_high_8 (Length: 404)
Name: NF18874_high_8
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 31 - 389
Target Start/End: Original strand, 35264624 - 35264982
Alignment:
| Q |
31 |
ggaagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagg |
130 |
Q |
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| T |
35264624 |
ggaagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagg |
35264723 |
T |
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| Q |
131 |
gttatgtgttgctgatacttagctgaagtgatatggagaaaggaaccgattccaaattctctaagtcacaaggacatcagaattttcgcaagcacttgtt |
230 |
Q |
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| T |
35264724 |
gttatgtgttgctgatacttagctgaagtgatatggagaaaggaaccgattccaaattccctaagtcacaaggacatcagaattttcgcaagcacttgtt |
35264823 |
T |
|
| Q |
231 |
tgattgaacatgctttaaatttgggtttgcacccaaggtggtagctactagccatggattttgatatatggtatggcctataacactacaccaactattc |
330 |
Q |
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| T |
35264824 |
tgattgaacatgctttaaatttgggtttgaacccaaggtggtagctactagccatggattttgatatatggtatggcctataacactacaccaactattc |
35264923 |
T |
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| Q |
331 |
ttcactaacttggattagaaggtagcaaaagtcagttaattcttagcagatgaggaaag |
389 |
Q |
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| T |
35264924 |
ttcactaacttggattagaagatagcaaaagtcagttaattcttagaagatgaggaaag |
35264982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 35272032 - 35272235
Alignment:
| Q |
69 |
aagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatggag |
168 |
Q |
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| T |
35272032 |
aagaaggatcttgggtctccaagctgaacttggatgcaaaagatagttgggtgaagagcactgatatgtgttgctgatacttagctgaagtaatatgg-- |
35272129 |
T |
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| Q |
169 |
aaaggaaccgattccaaattctctaagtcacaaggacatcag-aattttcgcaagcacttgtttgattgaacatgctttaaatttgggtttgcacccaag |
267 |
Q |
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| T |
35272130 |
--aggaacagattccaaat--tctaagtcacagggacatcggaaatttttgcaagcacttgtttgactgaacgttctttgaatttgggtttgaacccgag |
35272225 |
T |
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| Q |
268 |
gtggtagcta |
277 |
Q |
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||||| |||| |
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| T |
35272226 |
gtggttgcta |
35272235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 35272253 - 35272315
Alignment:
| Q |
327 |
attcttcactaacttggattagaaggtagcaaaagtcagttaattcttagcagatgaggaaag |
389 |
Q |
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| T |
35272253 |
attcttcactaactttgattagaagatagcaaaagtcagttaattcttagcagatgaggaaag |
35272315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 35209432 - 35209480
Alignment:
| Q |
117 |
gagtgaagagcagggttatgtgttgctgatacttagctgaagtgatatg |
165 |
Q |
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| T |
35209432 |
gagtgaagagcatggatacatgctgctgatacttagctgaagtgatatg |
35209480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 35271956 - 35272004
Alignment:
| Q |
33 |
aagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatcttg |
81 |
Q |
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| T |
35271956 |
aagtctgcagattaagcaaaaactgcagcgctacagaagaaggatcttg |
35272004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 36778408 - 36778578
Alignment:
| Q |
33 |
aagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggt |
132 |
Q |
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||||||||||| ||||||||| | || || ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| || |
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| T |
36778408 |
aagtctgcagatgaagcaaaagctgcaacgctacagaagaaggatcctggggctccaagctgaacttggatgcaaaagatagttgggtgaagagcatgga |
36778507 |
T |
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| Q |
133 |
tatgtgttgctgatacttagctgaagtgatatggagaaaggaaccgattccaaattctctaagtcacaaggacatca |
209 |
Q |
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| T |
36778508 |
tatgtgtttctgatacttaggtaaagtgatatgg----aggaacagattccaaat--tctaagtcacagggacatca |
36778578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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