View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_high_9 (Length: 380)
Name: NF18874_high_9
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 52411727 - 52412091
Alignment:
| Q |
1 |
acagaatacataatctaattttggagatatcaggaagtcattaatggtttattcctgctgttcgcatcttgtattttctgnnnnnnnnactggttttgtt |
100 |
Q |
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| T |
52411727 |
acagaatacataatctaattttggagatatcaggaagtcattaatggtttattcctgctgttcgcatcttgtattttctgttttttttactggttttggt |
52411826 |
T |
|
| Q |
101 |
gtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgaaatgcaatattaaccattttgactgtcaaatttaaagttttc |
200 |
Q |
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| T |
52411827 |
gtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgtaatgcaatattaaccattttgactgtcaaatttaaagttttc |
52411926 |
T |
|
| Q |
201 |
attaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacaccaaaattctgtcagtcaccattatcactcaccaaaacctgaa |
300 |
Q |
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| T |
52411927 |
attaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacaccaaaattctgtcagtcaccattatcactcaccaaaacctgaa |
52412026 |
T |
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| Q |
301 |
gaaaatcacaccaatttctcttcacagtgnnnnnnngttgctgttaagttttatgaagtgattga |
365 |
Q |
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| T |
52412027 |
gaaaatcacaccaatttctcttcacagtgtttttttgttgctgttaagttttatgaagtgattga |
52412091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 7773808 - 7773741
Alignment:
| Q |
296 |
ctgaagaaaatcacaccaatttctcttcacagtgnnnnnnngttgctgttaagttttatgaagtgatt |
363 |
Q |
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|||||||||| |||||||||||||||| ||| || ||||||||||||||||||| ||||||| |
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| T |
7773808 |
ctgaagaaaagcacaccaatttctctttacaatgttttttagttgctgttaagttttatgcagtgatt |
7773741 |
T |
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