View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18874_low_1 (Length: 980)
Name: NF18874_low_1
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 753; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 11 - 967
Target Start/End: Original strand, 34794902 - 34795872
Alignment:
| Q |
11 |
agaaaatgacggtgagatgaaaacgaaggcgggcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgca |
110 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34794902 |
agaaaatgacggtgagatgaaaacgaaggcgagcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgca |
34795001 |
T |
|
| Q |
111 |
actatacccaatgatttagctgttgtccaatgcttctatggaggaaaagcatggatgatgnnnnnnn-ttagaacgcgttacagagaagagaaactgaaa |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
34795002 |
actatacccaatgatttggctgttgtccaatgcttctatggaggaaaagcatggatgatgaaaaaaaattagaacgcgttagagagaagagaaactgaaa |
34795101 |
T |
|
| Q |
210 |
aggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatgaga |
309 |
Q |
| |
|
||| || |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
34795102 |
aggcgtgcatgcaatttataaccagagtgaagggaataagaagaggcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatggga |
34795201 |
T |
|
| Q |
310 |
ggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcatttnnnnnnnccttaggagtcactggtgtannnnnnnnnnnnnnctaatatcaaactag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| | |||| |||||||||||||| |
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|
| T |
34795202 |
ggtttgtgtcatgtgacaaaatagaggagatggctgtgtcatttaaagaaaccttaggagtcaccgatgtatttttcctttttttctaatatcaaactac |
34795301 |
T |
|
| Q |
410 |
taaacaataatcttattttctgactcactttcttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagact |
509 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795302 |
taaacaataatcttattttctcactcactttcttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagact |
34795401 |
T |
|
| Q |
510 |
acaaaatgtggatcttattttcactttct-----------atcttttatgagggactaaattagatctt-gcaatttt-ctaagagactataagctaaga |
596 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
34795402 |
acaaaatgtggatcttattttcactttcttttctctttctatcttttatgaggggctaaattagatcttagcaatttttctaagagactataagctaaga |
34795501 |
T |
|
| Q |
597 |
catggatcttcaaggccaaatgaataggtgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattcct |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795502 |
catggatcttcaaggccaaatgaataggtgaagcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattcct |
34795601 |
T |
|
| Q |
697 |
tgcttggaaagcacacaatgacgtggtttgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaaccta |
796 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
34795602 |
tgcttggaaagcacacaattacgtggtttgaagaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaaccca |
34795701 |
T |
|
| Q |
797 |
actcctaaatcaaagcatatccatcacatgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttct |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795702 |
actcctaaatcaaagcatatccatcacatgcacacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttct |
34795801 |
T |
|
| Q |
897 |
atacagtaaacacaacaattacacgtagaaacacaaaacatgtcggactggggaccagtgtttgtttcaat |
967 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795802 |
atacagtaaacacaacaattacacgtagaaacacaaaacatgtcggactggggaccagtgtttgtttcaat |
34795872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 16911469 - 16911365
Alignment:
| Q |
65 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagcatgg |
164 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||| || ||| |||||||||| |
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|
| T |
16911469 |
aaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgatagagaaaaagcatgg |
16911370 |
T |
|
| Q |
165 |
atgat |
169 |
Q |
| |
|
||||| |
|
|
| T |
16911369 |
atgat |
16911365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 16911333 - 16911266
Alignment:
| Q |
193 |
gagaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtgt |
260 |
Q |
| |
|
|||||||||| |||||| |||| ||||| |||||||| |||||||||||||| |||||| |||||| |
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|
| T |
16911333 |
gagaagagaagatgaaaatatgtatatgcactttataactagagtgaaaggaatgagaagaggcgtgt |
16911266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 38303288 - 38303398
Alignment:
| Q |
60 |
tgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaag |
159 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
38303288 |
tgatgaaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccatggaggaacaa |
38303387 |
T |
|
| Q |
160 |
catggatgatg |
170 |
Q |
| |
|
||| ||||||| |
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|
| T |
38303388 |
catcgatgatg |
38303398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 49677145 - 49677039
Alignment:
| Q |
62 |
atgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||| || ||||| |||||||| || || |||||| | |
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|
| T |
49677145 |
atgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttccatagaagaaaagaa |
49677046 |
T |
|
| Q |
162 |
tggatga |
168 |
Q |
| |
|
| ||||| |
|
|
| T |
49677045 |
tcgatga |
49677039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 49677002 - 49676939
Alignment:
| Q |
196 |
aagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtg |
259 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49677002 |
aagagaaactgaaaaagtgtgtatgcaatttataaccagagtgaaaggaatgagaagaggcgtg |
49676939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 26154555 - 26154485
Alignment:
| Q |
283 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
353 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
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|
| T |
26154555 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26154485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 26167853 - 26167783
Alignment:
| Q |
283 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
353 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
|
|
| T |
26167853 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26167783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 30332696 - 30332822
Alignment:
| Q |
43 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatg |
142 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| | |||||||| ||||| |||| |||| ||| ||||||||| | ||||| ||||||||||| ||||| |
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|
| T |
30332696 |
gcaaggatgagaatg-atgatgaaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatg |
30332794 |
T |
|
| Q |
143 |
cttctatggaggaaaagcatggatgatg |
170 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |
|
|
| T |
30332795 |
cttccatggaggaaaagcatcgatgatg |
30332822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 12140053 - 12139979
Alignment:
| Q |
59 |
atgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgtt |
134 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||||| || |||||||||| ||||| ||||| |||| |
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|
| T |
12140053 |
atgatgaaaaaaacgatacc-aatgcaacaaacaaggatgagtacaaaagcaactatacacaatgctttagttgtt |
12139979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 17364554 - 17364612
Alignment:
| Q |
195 |
gaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaaga |
253 |
Q |
| |
|
||||||||| |||||| || | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17364554 |
gaagagaaattgaaaatgtttgtatgcagtttataaccagagtgaaaggaatgagaaga |
17364612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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