View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_12 (Length: 332)
Name: NF18874_low_12
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 201 - 324
Target Start/End: Complemental strand, 4387966 - 4387843
Alignment:
| Q |
201 |
atttgaaaattgtattcacaaaaaattaaacctcatttgaaaattgaacaagaagagggaaaaaataatgtccaattagaagatgaagaatctctctatt |
300 |
Q |
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| T |
4387966 |
atttgaaaattgtattcacaaaaaattaaacctcatttgaaaattgaacaagaagagggaaaaaataatgtccaattagaagatgaagaatctctctatt |
4387867 |
T |
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| Q |
301 |
gttaattcattcgatgcctttgct |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
4387866 |
gttaattcattcgatgcctttgct |
4387843 |
T |
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