View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18874_low_14 (Length: 285)
Name: NF18874_low_14
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 42664276 - 42664531
Alignment:
| Q |
13 |
aaaatatgcattaaccttctcgtgagagtaatgaaacatatataccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagt |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42664276 |
aaaatatgcattaaccttctcgttagagtaatgaaacatatataccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagt |
42664375 |
T |
|
| Q |
113 |
ccagtagagcagagcctagagatggagatttaagatacaacaatgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42664376 |
ccagtagagcagagcctagagatggagatttaagatacaacaatgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgt |
42664475 |
T |
|
| Q |
213 |
agaataggataatgtaatgtaattaaaataattcgtaactatcagattgtgaattt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42664476 |
agaataggataatgtaatgtaattaaaataattcgtaactatcagattgtgaattt |
42664531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University