View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18874_low_18 (Length: 240)

Name: NF18874_low_18
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18874_low_18
NF18874_low_18
[»] chr3 (3 HSPs)
chr3 (1-204)||(42633076-42633279)
chr3 (93-197)||(32979563-32979673)
chr3 (122-204)||(11219963-11220057)
[»] chr1 (4 HSPs)
chr1 (1-204)||(25786694-25786897)
chr1 (60-173)||(26055654-26055774)
chr1 (60-177)||(50678696-50678817)
chr1 (67-177)||(1616476-1616589)
[»] chr8 (3 HSPs)
chr8 (59-204)||(38590539-38590684)
chr8 (60-131)||(45541971-45542043)
chr8 (1-37)||(38590708-38590744)
[»] scaffold0007 (2 HSPs)
scaffold0007 (59-204)||(145418-145563)
scaffold0007 (1-37)||(145584-145620)
[»] scaffold1974 (1 HSPs)
scaffold1974 (60-177)||(154-278)
[»] scaffold1878 (1 HSPs)
scaffold1878 (60-177)||(996-1120)
[»] scaffold0290 (1 HSPs)
scaffold0290 (60-177)||(9066-9190)
[»] chr2 (4 HSPs)
chr2 (60-177)||(23178141-23178264)
chr2 (60-177)||(23589398-23589521)
chr2 (60-204)||(12853361-12853522)
chr2 (60-173)||(6707681-6707802)
[»] chr4 (1 HSPs)
chr4 (93-176)||(44303164-44303253)
[»] chr6 (1 HSPs)
chr6 (60-177)||(34083749-34083874)
[»] chr5 (2 HSPs)
chr5 (60-176)||(21388017-21388137)
chr5 (60-177)||(18694074-18694195)
[»] scaffold0051 (1 HSPs)
scaffold0051 (60-177)||(39417-39546)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 42633076 - 42633279
Alignment:
Q  1 ttttgattataggattacaaaagaattaaaaccaagannnnnnnnctnnnnnnnnnccaaaatcatcatcaatagcgcatcaacacatcgagaaatcata 100  Q
    |||||||||||||||||||||||||||||||||||||        ||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  42633076 ttttgattataggattacaaaagaattaaaaccaagattttttttctaaaaaaaaaccaaaatcatcatcaatagcgcatcaacacatcaagaaatcata 42633175  T
Q  101 ttcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaattcagcacatcaacaacacggtgctttgaaccaacaacaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42633176 ttcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaattcagcacatcaacaacacggtgctttgaaccaacaacaaca 42633275  T
Q  201 tcat 204  Q
    ||||    
T  42633276 tcat 42633279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 32979563 - 32979673
Alignment:
Q  93 aaatcatattcaacccattttaattcttttcatcatcat------gaattaaaaacaatggatttctccaaattcagcacatcaacaacacggtgctttg 186  Q
    |||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  32979563 aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaattaaaaacaatggatttctccaaattcagcacatcaacaacacgatactttg 32979662  T
Q  187 aaccaacaaca 197  Q
    |||||||||||    
T  32979663 aaccaacaaca 32979673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 11219963 - 11220057
Alignment:
Q  122 tcatcatcatgaattaaaaacaa-tggatttctccaaattcagcacat-----------caacaacacggtgctttgaaccaacaacaacatcat 204  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||           |||||||| ||||||||||| |||||||||||||||    
T  11219963 tcatcatcatgaattaaaaaaaaatggatttctccaaattcagcacataaacagcacaacaacaacatggtgctttgaaacaacaacaacatcat 11220057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 25786897 - 25786694
Alignment:
Q  1 ttttgattataggattacaaaagaattaaaaccaagannnnnnnnctnnnnnnnnnccaaaatcatcatcaatagcgcatcaacacatcgagaaatcata 100  Q
    |||||||||||||||||||||||||||||||||||||        ||         ||||||||||||||||||||||||||||||||||||||||||||    
T  25786897 ttttgattataggattacaaaagaattaaaaccaagattttttttctaaaaaaaaaccaaaatcatcatcaatagcgcatcaacacatcgagaaatcata 25786798  T
Q  101 ttcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaattcagcacatcaacaacacggtgctttgaaccaacaacaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25786797 ttcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaattcagcacatcaacaacacgatgctttggaccaacaacaaca 25786698  T
Q  201 tcat 204  Q
    ||||    
T  25786697 tcat 25786694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 26055774 - 26055654
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca------tcatgaattaaaaacaatggatttc 152  Q
    ||||||||||||||||| ||| ||||||||| |||||||| ||||||||| |||| |||||||||||||      |||||||||||||| ||||||||||    
T  26055774 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaattaaaaaaaatggatttc 26055675  T
Q  153 tccaaattcagcacatcaaca 173  Q
    |||||||||||||||| ||||    
T  26055674 tccaaattcagcacataaaca 26055654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 50678696 - 50678817
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcatga---attaaaaacaatggatttctcc 155  Q
    |||||||||||| |||| | | ||||||||||| |||| || |||| ||| |||||||||||||||||||||| |   ||| |||| |||| |||||| |    
T  50678696 aaatcatcatcagtagcagaaacaacacatcgataaattattttcatccctttttaattcttttcatcatcatcataaatttaaaaaaatgcatttcttc 50678795  T
Q  156 aaattcagcacatcaacaacac 177  Q
    ||||||||| ||||||||||||    
T  50678796 aaattcagcccatcaacaacac 50678817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 1616476 - 1616589
Alignment:
Q  67 catcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttt---tcatcatcatgaattaaaaacaatggatttctccaaattca 162  Q
    |||||||||| ||| ||||||||| | |||||| ||||||||| ||| ||||||||   |||||||||| |||||||||| ||  |||| ||||||||||    
T  1616476 catcaatagcagcaacaacacatcaaaaaatcaaattcaacccttttgaattcttttcatcatcatcataaattaaaaac-ataaatttttccaaattca 1616574  T
Q  163 gcacatcaacaacac 177  Q
     ||||| ||||||||    
T  1616575 acacattaacaacac 1616589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 38590684 - 38590539
Alignment:
Q  59 aaaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaa 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38590684 aaaatcatcatcaatagtgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaa 38590585  T
Q  159 ttcagcacatcaacaacacggtgctttgaaccaacaacaacatcat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38590584 ttcagcacatcaacaacacggtgctttgaaccaacaacaacatcat 38590539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 45541971 - 45542043
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcat 131  Q
    ||||||||||||||||| ||| ||||||||| |||||||| | ||||||  |||| |||||||||||||||||    
T  45541971 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaaatcaaccattttttattcttttcatcatcat 45542043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38590744 - 38590708
Alignment:
Q  1 ttttgattataggattacaaaagaattaaaaccaaga 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38590744 ttttgattatatgattacaaaagaattaaaaccaaga 38590708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 145563 - 145418
Alignment:
Q  59 aaaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcatgaattaaaaacaatggatttctccaaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  145563 aaaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcatgaattaaaaataatggatttctccaaa 145464  T
Q  159 ttcagcacatcaacaacacggtgctttgaaccaacaacaacatcat 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  145463 ttcagcacatcaacaacacagtgctttgaaccaacaacaacatcat 145418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 145620 - 145584
Alignment:
Q  1 ttttgattataggattacaaaagaattaaaaccaaga 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  145620 ttttgattataggattacaaaagaattaaaaacaaga 145584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 278 - 154
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca------tcatgaatt-aaaaacaatggatttc 152  Q
    |||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||||||||      ||||||||| ||||| ||| ||||||    
T  278 aaatcatcatcaatagagcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaattaaaaaaaaatagatttc 179  T
Q  153 tccaaattcagcacatcaacaacac 177  Q
    |||||||||||||||||||||||||    
T  178 tccaaattcagcacatcaacaacac 154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 996 - 1120
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttt------tcatcatcatgaatt-aaaaacaatggatttc 152  Q
    |||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||      ||||||||||||||| ||||| ||| ||||||    
T  996 aaatcatcatcaatagagcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaattaaaaaaaaatagatttc 1095  T
Q  153 tccaaattcagcacatcaacaacac 177  Q
    |||||||||||||||||||||||||    
T  1096 tccaaattcagcacatcaacaacac 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 9190 - 9066
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca------tcatgaatt-aaaaacaatggatttc 152  Q
    |||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||||||||      ||||||||| ||||| ||| ||||||    
T  9190 aaatcatcatcaatagagcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaattaaaaaaaaatagatttc 9091  T
Q  153 tccaaattcagcacatcaacaacac 177  Q
    |||||||||||||||||||||||||    
T  9090 tccaaattcagcacatcaacaacac 9066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 23178141 - 23178264
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcat------catcatgaattaaaaacaatggatttct 153  Q
    |||||||||||||||| | | ||||||||| |||||||| ||||||||| |||| |||||||||||      |||||||||||||||| ||| |||||||    
T  23178141 aaatcatcatcaatagagtaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaattaaaaaaaatagatttct 23178240  T
Q  154 ccaaattcagcacatcaacaacac 177  Q
    ||||||||||||||||||||||||    
T  23178241 ccaaattcagcacatcaacaacac 23178264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 23589398 - 23589521
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcat------catcatgaattaaaaacaatggatttct 153  Q
    |||||||||||||||| | | ||||||||| |||||||| ||||||||| |||| |||||||||||      |||||||||||||||| ||| |||||||    
T  23589398 aaatcatcatcaatagagtaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaattaaaaaaaatagatttct 23589497  T
Q  154 ccaaattcagcacatcaacaacac 177  Q
    ||||||||||||||||||||||||    
T  23589498 ccaaattcagcacatcaacaacac 23589521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 12853361 - 12853522
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatcatcat------gaattaaaaacaatggatttc 152  Q
    ||||||||||||||| | ||| ||||||||| |||||||| ||||||||  ||||||||||||||||||||||      |||||| ||| ||||||||||    
T  12853361 aaatcatcatcaatatcagcaacaacacatcaagaaatcaaattcaaccttttttaattcttttcatcatcatcatcatgaattataaa-aatggatttc 12853459  T
Q  153 tccaaattcagcacat-----------caacaacacggtgctttgaaccaacaacaacatcat 204  Q
    ||||||||||||||||           |||||||| ||||||||||| |||||||||||||||    
T  12853460 tccaaattcagcacataaacagcacaacaacaacatggtgctttgaaacaacaacaacatcat 12853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 6707802 - 6707681
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca------tcatgaatt-aaaaacaatggattt 151  Q
    ||||||||||||||||| ||| ||||||||| | |||||| ||||||||| |||| |||||||||||||      ||||||||| ||||| |||| ||||    
T  6707802 aaatcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaattaaaaaaaaatgaattt 6707703  T
Q  152 ctccaaattcagcacatcaaca 173  Q
    ||||||||||||||||| ||||    
T  6707702 ctccaaattcagcacataaaca 6707681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 44303164 - 44303253
Alignment:
Q  93 aaatcatattcaacccattttaattcttttcatcatcat------gaattaaaaacaatggatttctccaaattcagcacatcaacaaca 176  Q
    |||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| |||||||||||||    
T  44303164 aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaattaaaaacaatggatttctccaaattcatcacatcaacaaca 44303253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 34083874 - 34083749
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca------tcatgaattaaa-aacaatggattt 151  Q
    |||| |||||||||||| ||| ||||||||| |||||||| ||||||||| |||| |||||||||||||      |||||||||||| || ||| |||||    
T  34083874 aaattatcatcaatagcagcaacaacacatcaagaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaattaaagaaaaatagattt 34083775  T
Q  152 ctccaaattcagcacatcaacaacac 177  Q
    |||||| |||||||||||||||||||    
T  34083774 ctccaatttcagcacatcaacaacac 34083749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 21388017 - 21388137
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcat---catcatgaattaaaaacaatggatttctcc 155  Q
    |||||||| |||||||| ||| ||||||||| | |||| || |||| ||| ||||||||||||||||   |||||||||||||||| |||| |||||| |    
T  21388017 aaatcatcgtcaatagcagcaacaacacatcaataaattattttcatccctttttaattcttttcatcatcatcatgaattaaaaaaaatgcatttcttc 21388116  T
Q  156 aaattcagcacatcaacaaca 176  Q
    ||||||||| |||||||||||    
T  21388117 aaattcagcccatcaacaaca 21388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 18694074 - 18694195
Alignment:
Q  60 aaatcatcatcaatagcgcatcaacacatcgagaaatcatattcaacccattttaattcttttcat------catcatgaattaaaaacaatggatttct 153  Q
    |||||||||||| ||||  | ||||||||| | |||| || |||| ||| ||||||||||||||||      |||||||||||||||| |||| ||||||    
T  18694074 aaatcatcatcagtagc--aacaacacatcaataaattattttcatccctttttaattcttttcatcatcatcatcatgaattaaaaaaaatgtatttct 18694171  T
Q  154 ccaaattcagcacatcaacaacac 177  Q
     |||||||||| ||||||||||||    
T  18694172 tcaaattcagcccatcaacaacac 18694195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 39546 - 39417
Alignment:
Q  60 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacccattttaattcttttcatca---------tcatgaatt--aaaaacaatgg 147  Q
    ||||||||||||||||| ||| ||||||||| |||||||| | ||||||| |||| |||||||||||||         |||||||||  ||||| |||||    
T  39546 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaacccttttttattcttttcatcatcatcatcatcatgaattaaaaaaaaaatgg 39447  T
Q  148 atttctccaaattcagcacatcaacaacac 177  Q
    ||||||||||||||| ||||||||||||||    
T  39446 atttctccaaattcaacacatcaacaacac 39417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University