View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_19 (Length: 239)
Name: NF18874_low_19
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 4474334 - 4474543
Alignment:
| Q |
15 |
gaccgagaaacaatctccacgtcttttatccttagccccgcgaatgtcacaaagattaatgttttgattgccaaggtttccgagacgaataggtatgtaa |
114 |
Q |
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| T |
4474334 |
gaccgagaaacaatctccacgtcttttatccttagccccgcgaatgtcacaaagattaatgttttgattgccaaggtttccgagacgaataggtacgtga |
4474433 |
T |
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| Q |
115 |
aatatacgaaagggactaaggataagagaattaaagctcttagaatgcttccagcttcgagtgcgacgagcatgtagtatggaaatgcacttcgcgacac |
214 |
Q |
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| T |
4474434 |
aatatacgaaagggactaaggataagagaattaaagctcttagaatgcttccagcttcgagtgcgacgagcatgtagtatggaaatgcacttcgcgacat |
4474533 |
T |
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| Q |
215 |
gagaagggtg |
224 |
Q |
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|||||||||| |
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| T |
4474534 |
gagaagggtg |
4474543 |
T |
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