View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_21 (Length: 230)
Name: NF18874_low_21
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 14812788 - 14813012
Alignment:
| Q |
1 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812788 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
14812887 |
T |
|
| Q |
101 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812888 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
14812987 |
T |
|
| Q |
201 |
ccggattaatctaagcatgtggttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
14812988 |
ccggattaatctaagcatgtggttt |
14813012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15259783 - 15260007
Alignment:
| Q |
1 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259783 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
15259882 |
T |
|
| Q |
101 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259883 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
15259982 |
T |
|
| Q |
201 |
ccggattaatctaagcatgtggttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
15259983 |
ccggattaatctaagcatgtggttt |
15260007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17521392 - 17521168
Alignment:
| Q |
1 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17521392 |
aaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttctgtattg |
17521293 |
T |
|
| Q |
101 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17521292 |
taaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaattttctat |
17521193 |
T |
|
| Q |
201 |
ccggattaatctaagcatgtggttt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
17521192 |
ccggattaatctaagcatgtggttt |
17521168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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