View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_22 (Length: 229)
Name: NF18874_low_22
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14812812 - 14812584
Alignment:
| Q |
1 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
100 |
Q |
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| T |
14812812 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
14812713 |
T |
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| Q |
101 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
200 |
Q |
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| T |
14812712 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
14812613 |
T |
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| Q |
201 |
tgaggaaattattcttgacaaggtgatga |
229 |
Q |
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| T |
14812612 |
tgaggaaattattcttgacaaggtgatga |
14812584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15259807 - 15259579
Alignment:
| Q |
1 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259807 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
15259708 |
T |
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| Q |
101 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
200 |
Q |
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| T |
15259707 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
15259608 |
T |
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| Q |
201 |
tgaggaaattattcttgacaaggtgatga |
229 |
Q |
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| T |
15259607 |
tgaggaaattattcttgacaaggtgatga |
15259579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17521368 - 17521592
Alignment:
| Q |
1 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521368 |
cctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatggagtgctgg |
17521467 |
T |
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| Q |
101 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521468 |
actcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaaggaaatag |
17521567 |
T |
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| Q |
201 |
tgaggaaattattcttgacaaggtg |
225 |
Q |
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| T |
17521568 |
tgaggaaattattcttgacaaggtg |
17521592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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