View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_3 (Length: 506)
Name: NF18874_low_3
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Original strand, 38631425 - 38631899
Alignment:
| Q |
17 |
cataaaaataaaggcaacacgttcatatgttcaaagaacaagaatcat--aagtgccaaggaacaattggaagtaaagaggacttactctgtatagtagt |
114 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631425 |
cataaaaataaaggcaacatgttcatatggtcaaagaacaagaatcatgaaagcgccaaggaacaattggaagtaaagaggacttactctgtatagtagt |
38631524 |
T |
|
| Q |
115 |
aaaaaatacttgcatcgtactcatgaatatccaagtataatagcacggctaagctgacaaaggaaaacaagcgcgtagttaacagcacaagagggtgcac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38631525 |
aaaaaatacttgcatcgtactcatgaatatccaagtataatagcatggctaagctgacaaaggaaaacaaacgcgtagttaacagcacaagagggtgcac |
38631624 |
T |
|
| Q |
215 |
tcctcgccaacaacagctggtccatagctgggaggtgctcacatgacctatggccactctattgtccgacaaaggtgaattagccaccagaaggctctcg |
314 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38631625 |
tcctcgccaac---agctggtccatagctgggaggtgctcacatgacctatggccactctattgtccgacgaaggtgaattagccaccagaaggctctcg |
38631721 |
T |
|
| Q |
315 |
acaaagatgttagaatcgctttgagaggtcgaggacccttcgtttgtccacagaacccataaggcacctaggatggacactccaacaattgcaaaacaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631722 |
acaaagatgttagaatcgctttgagaggtcgaggacccttcgtttgtccacagaacccataaggcacctaggatggacactccaacaattgcaaaacaca |
38631821 |
T |
|
| Q |
415 |
caaagtcgtaccattctaccaccaatgccatggatgtattcacttctgctaggtaaggcagctttgttgtttttggtg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38631822 |
caaagtcgtaccattctaccaccaatgccatggatgtattcacttctgctaggtaaggcagctttgttgtttttggtg |
38631899 |
T |
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