View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18874_low_4 (Length: 489)
Name: NF18874_low_4
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18874_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 35353595 - 35353139
Alignment:
| Q |
16 |
atgatcgttaagcaaatcatgacaggttccacagatgttatatacccaatgaatctcagcaccattttggccttggattctaagacccctctctagctaa |
115 |
Q |
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| T |
35353595 |
atgatcgttaagcaaatcatgacaggttccacagatgttatatacccaatgaatctcagcaccattttggccttggattctaagatccctctctagctaa |
35353496 |
T |
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| Q |
116 |
-ccaccaatcaatattatgattccatgtataataataagtacattatctatattggaacttgattaataataagttttatgtatcattttcagtccacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35353495 |
accaccaatcaatattatgattccatgtataataa---gtacattatctatattggaacttgattaataataagttttatgtatcattttgagtccacaa |
35353399 |
T |
|
| Q |
215 |
aaaagtgttatgtaatatgtatcgtagtatatatgttgttatggtttgaataataactacccttttttacaaaaataataataattaaatgtgtttttct |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35353398 |
aaaaatgttatgtaatatgtatcgtagtatatatgttgttatggtttgaataataactacccttttttacaaaaataataataattaaatgtgtttttct |
35353299 |
T |
|
| Q |
315 |
tttgccttcaatatgttcttgttttaaatcctcatcactacactacacttatgttgtgatttcatattcttattatgttgatttggatgaatattgggac |
414 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35353298 |
tttgccttcaatatgttcttgttttaaatcttcatcactacactacacttatgctgtgatttcatattcttattatgttgatttggatgaatattgggac |
35353199 |
T |
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| Q |
415 |
acctcttataattggtaagctatgtgggaatattgtcttaaaagttcttataaacatggt |
474 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35353198 |
atctcttataattggtaagctatgtgggaatattgtcttaaaagttcttataaacatggt |
35353139 |
T |
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