View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18874_low_5 (Length: 479)

Name: NF18874_low_5
Description: NF18874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18874_low_5
NF18874_low_5
[»] chr4 (7 HSPs)
chr4 (285-463)||(53238458-53238639)
chr4 (92-254)||(53238299-53238462)
chr4 (1-100)||(53237325-53237426)
chr4 (292-343)||(26736576-26736627)
chr4 (242-344)||(50390135-50390236)
chr4 (291-356)||(2917616-2917681)
chr4 (292-350)||(20955057-20955115)
[»] chr7 (4 HSPs)
chr7 (291-350)||(5848791-5848850)
chr7 (291-350)||(46357787-46357846)
chr7 (291-350)||(46912929-46912988)
chr7 (291-348)||(4519748-4519805)
[»] chr3 (5 HSPs)
chr3 (291-350)||(40154758-40154817)
chr3 (291-332)||(13618875-13618916)
chr3 (291-355)||(50386164-50386228)
chr3 (291-348)||(51837497-51837554)
chr3 (286-350)||(7147181-7147245)
[»] chr1 (5 HSPs)
chr1 (291-355)||(2123579-2123643)
chr1 (299-343)||(25586030-25586074)
chr1 (291-355)||(38741312-38741376)
chr1 (291-350)||(33403762-33403821)
chr1 (291-355)||(50158917-50158981)
[»] chr5 (3 HSPs)
chr5 (291-355)||(34226003-34226067)
chr5 (291-348)||(3059297-3059354)
chr5 (291-355)||(25981464-25981528)
[»] chr2 (3 HSPs)
chr2 (295-342)||(2667489-2667536)
chr2 (291-355)||(918035-918099)
chr2 (291-355)||(41911803-41911867)
[»] chr8 (2 HSPs)
chr8 (301-343)||(144350-144392)
chr8 (291-355)||(29246832-29246896)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 285 - 463
Target Start/End: Original strand, 53238458 - 53238639
Alignment:
Q  285 catttggttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatgaacgcataatataatttttaaagtaaatt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  53238458 catttggttaatatatatagtttctttgatattttagtcacaccaatatcgaaagtctagatccgcacatgaacgtagaatataatttttaaagtaaatt 53238557  T
Q  385 aaaatatgaagacatgggagtgattacaatttatagatattgaagtata---tcaatatcttgggtttgcaaactaaaatat 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  53238558 aaaatatgaagacatgggagtgattacaatttatagatattgaagtatatattcaatatcttgggtttgcaaactaaaatat 53238639  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 92 - 254
Target Start/End: Original strand, 53238299 - 53238462
Alignment:
Q  92 tatttattttaagagatgaagagagctcatccaatccttagacaa-atgacaagtcaaagttggaatcatgattgtaagagatttatcaattgtaataca 190  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53238299 tatttattttaagagatgaagagagctcatccaatccttagagaacatgacaagtcaaagttgaaatcatgattgtaagagatttatcaattgtaataca 53238398  T
Q  191 acatatataaaattatgatccaaatatgtgacacatcagtgaaagtgtgaagcctaagccattt 254  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  53238399 acatatataaaattaagatccgaatatgtgacacataagtgaaagtgtgaagcctaagccattt 53238462  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 53237325 - 53237426
Alignment:
Q  1 aaaatactaattcattctaatagataaagaaacaattaaaagacaaagaaa--ataacaaccaaaatgtgagtttcgagtgtcattttatctttatttat 98  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||| |  |||||||||||||| ||| |||||||||||||||||||| |||||||    
T  53237325 aaaatactaattcattctaatagagaaagaaacaatcaaaagccaaagagagaataacaaccaaaatatgattttcgagtgtcattttatctatatttat 53237424  T
Q  99 tt 100  Q
    ||    
T  53237425 tt 53237426  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 26736576 - 26736627
Alignment:
Q  292 ttaatatatatagtttctttgatattttagtcacaccaatattaaaagtcta 343  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  26736576 ttaatatatatagtttctttgatattttagccacaccaatatcaaaagtcta 26736627  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 50390135 - 50390236
Alignment:
Q  242 gcctaagccatttttactgatgtgctcaaatgtgtcatatgtacatttggttaatatatatagtttctttgatattttagtcacaccaatattaaaagtc 341  Q
    ||||||||||||||| ||||||| || || |||| |||| ||||  ||| ||||||| |||| ||||||||||||||||| || | ||||||  ||||||    
T  50390135 gcctaagccatttttgctgatgtacttaa-tgtggcataagtacgattgattaatatttatattttctttgatattttagccatatcaatatcgaaagtc 50390233  T
Q  342 tag 344  Q
    |||    
T  50390234 tag 50390236  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 2917681 - 2917616
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatga 356  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| |||||||||||| |||||    
T  2917681 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatga 2917616  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 20955057 - 20955115
Alignment:
Q  292 ttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    ||||| |||||||||||||| |||||||||   |||||||||  |||||||||||||||    
T  20955057 ttaatgtatatagtttctttaatattttagcttcaccaatatcgaaagtctagatccgc 20955115  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 5848791 - 5848850
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5848791 gttaatatatataatttatttgatattttagtcacaccaatatcaaaagtctagatccgc 5848850  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 46357846 - 46357787
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    ||||||||||||||||||||||| | ||| | ||||||||||| ||| ||||||||||||    
T  46357846 gttaatatatatagtttctttgaaagttttgccacaccaatatcaaatgtctagatccgc 46357787  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 46912988 - 46912929
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| ||||||||||||    
T  46912988 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgc 46912929  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 4519748 - 4519805
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatcc 348  Q
    |||||||||||||||| |||||  | ||| ||||||||||||| ||| ||||||||||    
T  4519748 gttaatatatatagttgctttgcaagttttgtcacaccaatatcaaatgtctagatcc 4519805  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 40154817 - 40154758
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||    
T  40154817 gttaatatatatagtttctttgatattttagccacactaatatcaaaagtctaggtccgc 40154758  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 13618916 - 13618875
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaata 332  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  13618916 gttaatatatatagttttcttgatattttagtcacaccaata 13618875  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 50386164 - 50386228
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| |||||||||||| ||||    
T  50386164 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50386228  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 51837554 - 51837497
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatcc 348  Q
    ||||||||||||  ||||||||||||||||  || | |||||| ||||||||||||||    
T  51837554 gttaatatatattatttctttgatattttatccaaatcaatatcaaaagtctagatcc 51837497  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 7147245 - 7147181
Alignment:
Q  286 atttggttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    |||| ||||||||||||||||||||||  | ||| | ||||||||||| ||  ||||||||||||    
T  7147245 attttgttaatatatatagtttctttgcaaattttgccacaccaatatcaactgtctagatccgc 7147181  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 2123643 - 2123579
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| ||||||||||||| ||| |||||||||||| ||||    
T  2123643 gttaatatatatagttgctttgaaagttttgtcacaccaatatcaaatgtctagatccgcccatg 2123579  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 25586074 - 25586030
Alignment:
Q  299 atatagtttctttgatattttagtcacaccaatattaaaagtcta 343  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||    
T  25586074 atatattttctttgatattttagccacaccaatatcaaaagtcta 25586030  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 38741312 - 38741376
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| |||||||||||| ||||    
T  38741312 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 38741376  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 33403762 - 33403821
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgc 350  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| ||||||||||||    
T  33403762 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgc 33403821  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 50158917 - 50158981
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||| ||| |||||| | ||| | ||||||||||| ||| |||||||||||| ||||    
T  50158917 gttaatatatatggttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 50158981  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 34226003 - 34226067
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| |||||||||||| ||||    
T  34226003 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 34226067  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 3059297 - 3059354
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatcc 348  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| ||||||||||    
T  3059297 gttaatatatatagttactttgaaagttttgccacaccaatatcaaatgtctagatcc 3059354  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 25981464 - 25981528
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | |||||||||||  || |||||||||||| ||||    
T  25981464 gttaatatatatagttgctttgaaagttttgccacaccaatatcgaatgtctagatccgcccatg 25981528  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 2667536 - 2667489
Alignment:
Q  295 atatatatagtttctttgatattttagtcacaccaatattaaaagtct 342  Q
    ||||||||||||||||||| |||||| || |||||||||| |||||||    
T  2667536 atatatatagtttctttgaaattttaatcccaccaatattgaaagtct 2667489  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 918035 - 918099
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | ||||||||||| ||| || ||||||||| ||||    
T  918035 gttaatatatatagttgctttgaaagttttgccacaccaatatcaaatgtttagatccgcccatg 918099  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 41911803 - 41911867
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||| ||| |||||| | ||| | ||||||||||| ||| |||||||||||| ||||    
T  41911803 gttaatatatattgttgctttgaaagttttgccacaccaatatcaaatgtctagatccgcccatg 41911867  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 144392 - 144350
Alignment:
Q  301 atagtttctttgatattttagtcacaccaatattaaaagtcta 343  Q
    |||||| |||||||||||||| |||||||||||| ||||||||    
T  144392 atagttgctttgatattttagccacaccaatattgaaagtcta 144350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 29246896 - 29246832
Alignment:
Q  291 gttaatatatatagtttctttgatattttagtcacaccaatattaaaagtctagatccgcacatg 355  Q
    |||||||||||||||| |||||| | ||| | |||| |||||| ||| |||||||||||| ||||    
T  29246896 gttaatatatatagttgctttgaaagttttgccacatcaatatcaaatgtctagatccgcccatg 29246832  T

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