View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_high_1 (Length: 768)
Name: NF18875_high_1
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 498
Target Start/End: Complemental strand, 29116516 - 29116037
Alignment:
| Q |
30 |
atatctcttttgatgaattagaagccctacttgttctttgaaactccatggcaaggaaatatgagatgtgaagtagatcaaccatctcaaattccttcat |
129 |
Q |
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| T |
29116516 |
atatctcttttgatgaattagaagccctacttgttctttgaaactccatgcgaaggaaatatgaaatgtgacctagatcaaccatctcaaattccttcat |
29116417 |
T |
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| Q |
130 |
caaatcattcttaaagtcgtttatgtaagatccattgctacatgtgataagaaaatcatttacataaagatatagaatgattacccctttgcttttgtct |
229 |
Q |
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| T |
29116416 |
caaatcattcttaaattcgtttatgtaagatccattgctacatgtgataagaaaatcatttacataaagatatagaatgattacccctttgcttttgtct |
29116317 |
T |
|
| Q |
230 |
ttaatgacatacattccatgttcagaatcacatttgtt--------------acatcctaatattttatacacggtatataaagatttattcgatattta |
315 |
Q |
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| T |
29116316 |
ttaatgacatacattccatgttcagaatcacatttgttacaaagggcttgtaacatcctaatattttatacacgttgtataaagatttattcaatattta |
29116217 |
T |
|
| Q |
316 |
attatttaattaaaccacatggtgtagaaataaataataggggtgagtaagctatttgactaattcaaattttgatcatgcttagaagtgaggcgtgtga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29116216 |
attatttaattaaaccacatggtgtagaaataaataataggggtgagtaagctatttgactaattcaaattttgatcatgctt---agtgaggcgtgtga |
29116120 |
T |
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| Q |
416 |
aattgcaaccgaaacatttcctttcttttaggaattatctgtcaagtagttaataaccttataatgccttgatcttcctataa |
498 |
Q |
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| T |
29116119 |
aattgcaaccgaaacatttcctttcttttaggaaatatctgtcaagtagttaataaccttataatgccttgatcttcctataa |
29116037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 526 - 754
Target Start/End: Complemental strand, 29116041 - 29115813
Alignment:
| Q |
526 |
tataaaatttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccatcc---atgt |
622 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29116041 |
tataaaacttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccatcctgcatgt |
29115942 |
T |
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| Q |
623 |
gtatcatttctagtttaataaaccgtaacttaattatacacttggtttcacttcatgatgcctaaatctccagtttaaaattctctcacttttctcgtta |
722 |
Q |
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| T |
29115941 |
ttat-atttctagtttaataaaccgtaactt--tcatacacttggtttcacttcatgctgcctaaatctccagtttaaaattctctcacttttctcgtta |
29115845 |
T |
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| Q |
723 |
attatagaagcaattagaatcgcgttcatctc |
754 |
Q |
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| T |
29115844 |
attatagaagcaattagaatcgcgttcatctc |
29115813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 633
Target Start/End: Original strand, 13167588 - 13167675
Alignment:
| Q |
547 |
tttggttccaaatcctgttctattttaataaacca-taacttgttactcaattttaattctacaaaaccatccatgtgtatcatttct |
633 |
Q |
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||||||||| ||||| |||||||||||||||| | ||||||| ||||| ||| | ||||||||||| |||||| | |||||||||| |
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| T |
13167588 |
tttggttccccatcctattctattttaataaacgagtaacttgctactctattccagttctacaaaactatccatatctatcatttct |
13167675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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