View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_high_10 (Length: 330)
Name: NF18875_high_10
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 27574061 - 27573782
Alignment:
| Q |
16 |
ccttcaacatcagatttgccattacaaggaaaaggagcatcgacaaaaacaagatcgagtttgtctagaacattttgtggccacttatgtatctgttttt |
115 |
Q |
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| T |
27574061 |
ccttcaacatcagatttgccattacaaggaaaaggagcatcgacaaaaacaagatcgagtttgtcaagaacattttgtggccacttatgtatctgttttt |
27573962 |
T |
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| Q |
116 |
tcatgatctctccacttgttcgaaatccatgaagacacaaaattcttggttttcttcccttctcttcgttttccatcactcttcttcaattaaataaaat |
215 |
Q |
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| T |
27573961 |
tcatgatctctccacttgttcgaaatccatgaagacacaaaattcttggttttcttcccttctcttcgttttccatcactcttcttctattaaataaaat |
27573862 |
T |
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| Q |
216 |
aggaattatggacggtgcttacaaagagggtttcaaaattgtggaggcaatgaattgaatccaatttataggattcaggg |
295 |
Q |
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| T |
27573861 |
aggaattatggacggtgcttacaaagagggtttcaaaattgtggaggcaatgaattgaatccaatttataggattcaggg |
27573782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 13118818 - 13118625
Alignment:
| Q |
17 |
cttcaacatcagatttgccattacaaggaaaaggagcatcgacaaaaacaagatcgagtttgtctagaacattttgtggccacttatgtatctgtttttt |
116 |
Q |
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||||||||||||||||| |||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13118818 |
cttcaacatcagatttgtcattgcatggaaaaggagcttcgacaaaaacaagatctagtttgtctagaacattttgtggccacttatgtatctgtttttt |
13118719 |
T |
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| Q |
117 |
catgatctctccacttgttcgaaatccatgaagacacaaaattcttggttttcttcccttctcttcgttttccatcactcttcttcaattaaat |
210 |
Q |
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| T |
13118718 |
catgatctctccacttgttcgaaacccatgaagacacaaaatttttggttttcttaccttctcttcgttttccatctctcttcttcaattaaat |
13118625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 13118417 - 13118373
Alignment:
| Q |
204 |
attaaataaaataggaattatggacggtgcttacaaagagggttt |
248 |
Q |
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||||||| || ||| |||||||| ||||||||||||||||||||| |
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| T |
13118417 |
attaaattaattagaaattatgggcggtgcttacaaagagggttt |
13118373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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