View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_high_16 (Length: 248)
Name: NF18875_high_16
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 17573214 - 17573429
Alignment:
| Q |
15 |
cagagaccaatttgaaatttcgatacattgatagactattatgactatgttgcatattcaggaaccaaaataactattaccccgttgagaaagttcaaaa |
114 |
Q |
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| T |
17573214 |
cagagaccaatttgaaatttcgatacattgatagactattatgactacgttgcatattcaggaaccaaaataactattaccccgttgagaaagttcataa |
17573313 |
T |
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| Q |
115 |
acatttttgaaagggtcttatgttagtaatttatggaccaaattgaccagtagtagacacattcgaggacaaaactaattagttaattaatagaagacga |
214 |
Q |
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| T |
17573314 |
acatttttgaaagggtcttatgttagtaatttatggaccaaattgaccagtagtagacacattcgaggacaaaactaattagttaattaatagaagacga |
17573413 |
T |
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| Q |
215 |
atttcacgcataatca |
230 |
Q |
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| T |
17573414 |
atttcacgcataatca |
17573429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 17381354 - 17381280
Alignment:
| Q |
25 |
tttgaaatttcgatacattgatagactattatgacta--tgttgcatattcaggaaccaaaataactattacccc |
97 |
Q |
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| T |
17381354 |
tttgaaattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactattacccc |
17381280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 12922236 - 12922168
Alignment:
| Q |
25 |
tttgaaatttcgatacattgatagactattatgacta--tgttgcatattcaggaaccaaaataactat |
91 |
Q |
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| T |
12922236 |
tttgaaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaataactat |
12922168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 21601987 - 21601904
Alignment:
| Q |
15 |
cagagaccaatttgaaatttcgatacattgatagactattatgacta--tgttgcatattcaggaaccaaaataactattacccc |
97 |
Q |
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||||||| | |||| ||||| ||||||||||| ||||||| |||||| |||| |||||||||| |||||||| || |||||||| |
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| T |
21601987 |
cagagactattttggaattttgatacattgatggactattgtgactatttgttacatattcagg-accaaaatgaccattacccc |
21601904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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