View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_high_4 (Length: 515)
Name: NF18875_high_4
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 121 - 499
Target Start/End: Original strand, 36631442 - 36631815
Alignment:
| Q |
121 |
tttttaaaggtgatttacctggttacaggttaaccaagttgttaacactcacccctatttaattnnnnnnntatgtggcacgttaaacatcaaacaccac |
220 |
Q |
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| T |
36631442 |
tttttaaaggtgatttacctggttacaggttaaccaagttgttaacactcacccctatttaattaaaaaaatatgtggcacgttaaacatcaaacaccac |
36631541 |
T |
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| Q |
221 |
gcttcaatcacccatcaacacaaacagctataatcacacaccatcaatttctccttgcgattaacttctaacaccaaattactgctataat--------- |
311 |
Q |
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| T |
36631542 |
gcttcaatcacccatcaacacaaacagctataatcacacaccatcaatttctccttgcgattaacttctaacaccaaattactgccgtaatcatgtaaga |
36631641 |
T |
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| Q |
312 |
--------aataaaaccaaccttaagcagtctgacaaccttaacaattagagaaaacaaagagggaatcatcttattcaaccttacccttattttcgcct |
403 |
Q |
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| T |
36631642 |
tgtgaaccactaaaaccaaccttaagcagtctgacaaccttaacaattagagaaaacaaagagggaatcatcttattcaa-----------------cct |
36631724 |
T |
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| Q |
404 |
tcccatcaccatcccatcccaagaagaaaattagaaacacataacagagacatgcataaaaagaggacgtgattgtatgatatatagccctctatc |
499 |
Q |
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| T |
36631725 |
tcccatca-----ccatctcaagaagaaaattagaaacacagaacagagaaatgcataaaaagaggacgtgattgtatgatatatagccctctatc |
36631815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36630907 - 36631036
Alignment:
| Q |
1 |
ctgttaggcctcttataaaataaggaatagcagttactgttttttaagaggaatgctaggcgcaaacgctttgacactcgcggacgaacacacaccagta |
100 |
Q |
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| T |
36630907 |
ctgttaggcctcttataaaataaggaatagcagttactgttttttaagaggaatgctaggtgcaaatgctttgacactcgcggacgaacacacgccagta |
36631006 |
T |
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| Q |
101 |
ttgttaggccacgtcaaccatttttaaagg |
130 |
Q |
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| T |
36631007 |
ttgttaggccacgtcaaccatttttaaagg |
36631036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 9399618 - 9399521
Alignment:
| Q |
63 |
caaacgctttgacactcgcggacgaacacacaccagtattgttaggccacgtcaaccatttttaaaggtgatttacctggttacaggttaaccaagtt |
160 |
Q |
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| T |
9399618 |
caaaggctttgacacttgcggatgattacacgccaatattgttaagccacgtcaaccattttaaaaagttatttacctggttataggctaaccaagtt |
9399521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 29832760 - 29832697
Alignment:
| Q |
48 |
gaggaatgctaggcgcaaacgctttgacactcgcggacgaacacacaccagtattgttaggcca |
111 |
Q |
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| T |
29832760 |
gagggatgctaggtgcaaacgctttgacagacgcggaccaacacacgcctgtattgttaagcca |
29832697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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