View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18875_high_6 (Length: 448)
Name: NF18875_high_6
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 18943058 - 18942651
Alignment:
| Q |
19 |
tggcacacttaga-tcaatttgaaggactgattggcaa------caagagagttttggctagtagtcttagtgtgatttggtttacgagtatttggaa-- |
109 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18943058 |
tggcacacttaaaatcaatttgaaggactgattggcactggcagcaagagagttttggctagtagtcttagtgtgatttggtttacgagtatttggaaat |
18942959 |
T |
|
| Q |
110 |
-----ggctaggaatgacaaactattaaaaataaa------ttgttttggaaaatattattgaatcagttaagcggtgctcatggaattagttgagattc |
198 |
Q |
| |
|
||| |||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
18942958 |
tggaaggcaaggaatgacaaactattaaaaaaagaaagatattgtttcggaaaatattattgaatcagttaagctgtgctcgtggaattgattgagattc |
18942859 |
T |
|
| Q |
199 |
aaggcaaataacaagaattacaatatgaatcaatggttcgtgaatcccagagcatgtctcgaatgtgtggatttgcaaggatgattatgatgaggttaat |
298 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
18942858 |
aaggcaaatagcacgaattataatatgaatcaatggttcgtgaatcccagagcatgtctcggatgcgtggatttgcaaggatgattatgatgagg-taat |
18942760 |
T |
|
| Q |
299 |
gattcacactctctgatataatggagcggtctgcagtgttcgatcaggtttggaggttgtataacatctacaggtgcctcattgtgtttgtattttcctg |
398 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18942759 |
gattcacactttctgatataatggagtggtctgcagtgttcgatcaggtttggaggttgtataacatctacaggtgcctcactgtgtttgtattttcctg |
18942660 |
T |
|
| Q |
399 |
tatggatgt |
407 |
Q |
| |
|
||||||||| |
|
|
| T |
18942659 |
tatggatgt |
18942651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 37664083 - 37664182
Alignment:
| Q |
184 |
aattagttgagattcaaggcaaataacaagaattacaatatgaatcaatggttcgtgaatcccagagcatgtctcgaatgtgtggatttgcaaggatgat |
283 |
Q |
| |
|
|||| ||||||||| ||| |||| |||| | ||||| |||||||||| || | ||||||||| ||||| ||||| | ||||||||||||| |||| |||| |
|
|
| T |
37664083 |
aattggttgagatttaagtcaaagaacatggattacgatatgaatcattgctacgtgaatcctagagcttgtcttggatgtgtggatttgtaagggtgat |
37664182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 37673805 - 37673904
Alignment:
| Q |
184 |
aattagttgagattcaaggcaaataacaagaattacaatatgaatcaatggttcgtgaatcccagagcatgtctcgaatgtgtggatttgcaaggatgat |
283 |
Q |
| |
|
|||| ||||||||| ||| |||| |||| | ||||| |||||||||| || | ||||||||| ||||| ||||| | ||||||||||||| |||| |||| |
|
|
| T |
37673805 |
aattggttgagatttaagtcaaagaacatggattacgatatgaatcattgctacgtgaatcctagagcttgtcttggatgtgtggatttgtaagggtgat |
37673904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 21458979 - 21458865
Alignment:
| Q |
145 |
ttggaaaatattattgaatcagttaagcggtgctcatggaattagttgagattcaaggcaaataacaagaattacaatatgaatcaatggttcgtgaatc |
244 |
Q |
| |
|
|||||||||||| |||||||||| || ||| | || ||||||||| ||||||||||| |||||| || | | |||||| ||||||||||||||||||||| |
|
|
| T |
21458979 |
ttggaaaatattgttgaatcagtgaaacggagttcctggaattagctgagattcaagacaaatagcatggagtacaatctgaatcaatggttcgtgaatc |
21458880 |
T |
|
| Q |
245 |
ccagagcatgtctcg |
259 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
21458879 |
ccagagcttgtctcg |
21458865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 20812707 - 20812662
Alignment:
| Q |
224 |
tgaatcaatggttcgtgaatcccagagcatgtctcgaatgtgtgga |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
20812707 |
tgaatcaatggttcgtgaatcccagagcttgtctcggctgtgtgga |
20812662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 20814771 - 20814571
Alignment:
| Q |
73 |
gtagtcttagtgtgatttggtttacgagtatttggaaggctaggaatgacaaactattaaaaa-----taaattgttttggaaaatattattgaatcagt |
167 |
Q |
| |
|
|||| ||| |||||||||||||| | ||||||||||||| |||||||||||| |||| |||| || || |||||||||||| ||||||| || |
|
|
| T |
20814771 |
gtagacttggtgtgatttggtttgcctgtatttggaaggcaaggaatgacaaattattcaaaaccaaggaagtttgcttggaaaatattgttgaatcggt |
20814672 |
T |
|
| Q |
168 |
taagcggtgctcatggaattagttgagattcaaggcaaataacaagaattacaatatgaatcaatggttcgtgaatcccagagcatgtctcgaatgtgtg |
267 |
Q |
| |
|
|| || | | ||||||| | ||||||||||| |||||| || | | |||||| ||| |||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
20814671 |
gaaacgaagttgctggaattggctgagattcaagacaaatagcatggagtacaatctgagtcaatggttcgtgaat-tcagagcttgtctcggctgtgtg |
20814573 |
T |
|
| Q |
268 |
ga |
269 |
Q |
| |
|
|| |
|
|
| T |
20814572 |
ga |
20814571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University