View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18875_low_11 (Length: 327)
Name: NF18875_low_11
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 35382215 - 35382515
Alignment:
| Q |
11 |
cagagaggagaaaatggcgacaacagtagcaagtagagaattattcatagatggagagtggagagctcctatcctcaacaaaaggattccaataatcaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35382215 |
cagagaggagaaaatggcgacaacagtagcaagtagagaattattcatagatggagagtggagagctcctatcctcaacaaaaggattccaataatcaat |
35382314 |
T |
|
| Q |
111 |
ccctccaatgaaaacatcataggtactttgtttagtccctctcatcttgtcttgttagtttttaatgtttctggtcttttatcaagtatgatatgataat |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35382315 |
ccctccaatgaaaacatcataggtcctttgtttagtccctgtcatcttgtcttgttagtttttaatgtttctggtcttttatcaagtatgatatgataat |
35382414 |
T |
|
| Q |
211 |
aactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgctgttgatgctgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35382415 |
aactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgctgttgatgctgc |
35382514 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
35382515 |
t |
35382515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 35364851 - 35364564
Alignment:
| Q |
11 |
cagagaggagaaaatggcgacaacagtagcaagtagagaattattcatagatggagagtggagagctcctatcctcaacaaaaggattccaataatcaat |
110 |
Q |
| |
|
||||||||| || ||||| | | |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35364851 |
cagagaggaaaatatggcaatagcagtagcaagtagacaattattcatagatggagagtggaaagctcctatactcaacaaaaggattccaataatcaat |
35364752 |
T |
|
| Q |
111 |
ccctccaatgaaaacatcataggtactttgtttagtccctctcatcttgtcttgttagtttttaatgtttctggtcttttatc-aagtatgatatgataa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
35364751 |
ccctccaatgaaaacatcataggtactttgtttagtccctctca--------------tttttaatgtttctgtttttttatcaaagtatgatatgataa |
35364666 |
T |
|
| Q |
210 |
taactacttctatgttgtggcattatatgaatggttgacacaaatgcaggggatataccagctgctactaaggaagatgttgaccttgctgttgatgctg |
309 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35364665 |
taactacttctatgttgtggcattgtgtgaatggttgacacacatgcaggggatatacctgctgctactaaggaagatgttgaccttgctgtggatgctg |
35364566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University