View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_low_13 (Length: 257)
Name: NF18875_low_13
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_low_13 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 116134 - 115883
Alignment:
| Q |
7 |
aaagaggaggcttatacacctctaatcatatctattggacctatccaccataacaacgaa-gacttgaggaaatgcaagagtacaaacatagatatttcc |
105 |
Q |
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| T |
116134 |
aaagaggaggcttatacacctctaatcatatctattggacctatccaccataacaacgaaagacttgaggaaatgcaagagtacaaacatagatatttcc |
116035 |
T |
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| Q |
106 |
attatttttggaattgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaa |
205 |
Q |
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| T |
116034 |
attatttttggaatcgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaa |
115935 |
T |
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| Q |
206 |
attcacagatatcaacagtgagcaattggttgacatgatactattggattct |
257 |
Q |
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| T |
115934 |
attcacagatatcaacagtgagcaattggttgacatgatactattggattct |
115883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 177653 - 177901
Alignment:
| Q |
7 |
aaagaggaggcttatacacctctaatcatatctattggacctatccaccataacaacgaaga-cttgaggaaatgcaagagtacaaacatagatatttcc |
105 |
Q |
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| T |
177653 |
aaagaagaggcatatacacctctgctcatatcaattggacctatccaccataacaacaaaaaacttgaggaaatgcaagagcataaacaaagatattttc |
177752 |
T |
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| Q |
106 |
attatttttggaattgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaa |
205 |
Q |
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| T |
177753 |
attttttttggaatcgcatagaagaaaaaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccattgttaccaaaagaa |
177852 |
T |
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| Q |
206 |
attcacagatatcaacagtgagcaattggttgacatgatactattggat |
254 |
Q |
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| T |
177853 |
gtttcctgatatcagccatgaacaatttgttgacatgatattgttggat |
177901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 606354 - 606512
Alignment:
| Q |
18 |
ttatacacctctaatcatatctattggacctatccaccataacaacgaag-acttgaggaaatgcaagagtacaaacatagatatttccattatttttgg |
116 |
Q |
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| T |
606354 |
ttatacacctctactcatatcaattggacctatccaccatagcaacaaaacacatgaggatatgcaagaacacaaacagagatattttcatttcttttgg |
606453 |
T |
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| Q |
117 |
aattgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaaga |
175 |
Q |
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| T |
606454 |
aatcgcctagaccaaaaaagtgatttaatgaactacaaaactttccttgaacaagaaga |
606512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 10517 - 10275
Alignment:
| Q |
19 |
tatacacctctaatcatatctattggacctatccaccataacaacga----agacttgaggaaatgcaagagtacaaacatagatatttccattattttt |
114 |
Q |
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| T |
10517 |
tatacacctctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttct |
10418 |
T |
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| Q |
115 |
ggaattgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacaga |
214 |
Q |
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| T |
10417 |
ggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatga |
10318 |
T |
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| Q |
215 |
tatcaacagtgagcaattggttgacatgatactattggattct |
257 |
Q |
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| T |
10317 |
tatcagcaatgaacaaatggttgatatgatactgttggattct |
10275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 23971 - 23729
Alignment:
| Q |
19 |
tatacacctctaatcatatctattggacctatccaccataacaacga----agacttgaggaaatgcaagagtacaaacatagatatttccattattttt |
114 |
Q |
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| T |
23971 |
tatacacctctgctgatatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttct |
23872 |
T |
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| Q |
115 |
ggaattgcctagacaagaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacaga |
214 |
Q |
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| T |
23871 |
ggaatcgtttggacagcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatga |
23772 |
T |
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| Q |
215 |
tatcaacagtgagcaattggttgacatgatactattggattct |
257 |
Q |
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| T |
23771 |
tatcagcaatgaacaaatggttgatatgatactgttggattct |
23729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 37438640 - 37438553
Alignment:
| Q |
132 |
aaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatca |
219 |
Q |
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| T |
37438640 |
aaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagcaaaatatacgccgatgttaccaaaagaaattctcaaatatca |
37438553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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