View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_low_14 (Length: 253)
Name: NF18875_low_14
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 35164220 - 35164451
Alignment:
| Q |
4 |
tggagaagcataggaatttataaccaaaataattccatataactcaacagaaacaaatttgagtatgagtttcttaagttggttctgatattagactccc |
103 |
Q |
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| T |
35164220 |
tggagaaccataggaatttataaccaaaataattccatataactcaacagaaacaaatttgagtatgagtttcttaagttggttctgatattagactccc |
35164319 |
T |
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| Q |
104 |
tctttttgcatcaattcataacctaatctagagcaaacgttgttttacatttgaagcatagataacctttgtgttgttcttttactaaaagtgacagtta |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35164320 |
tctttttgcagcaattcataacctaatctagagcaaacattgttttacatttgaagcatagataacctttgtgttgttcttttactaaaagcgacagtta |
35164419 |
T |
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| Q |
204 |
taatgttttttcatctttttgaactgaaaact |
235 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35164420 |
taatgttttttcatctttttgaactgaaaact |
35164451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 50875292 - 50875451
Alignment:
| Q |
77 |
ttaagttggttctgatattagactccctctttttgcatcaattcataacctaatctagagcaaacgttgttttacatttgaagcatagataacctttgtg |
176 |
Q |
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||||||||||||||||||||| |||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50875292 |
ttaagttggttctgatattagcatccctcttttcgtagcaattcataacctaatttagagcaaacgttgttttacatttgaagcatagataatctttgtg |
50875391 |
T |
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| Q |
177 |
ttgttcttttactaaaagtgacagttataatgttttttcatctttttgaactgaaaactg |
236 |
Q |
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| T |
50875392 |
ttgttcttttactaaaagcgacaattataatgttttttcatctttttgaattgaaaactg |
50875451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 50328196 - 50328314
Alignment:
| Q |
118 |
ttcataacctaatctagagcaaacgttgttttacatttgaagcatagataacctttgtgttgttcttttactaaaagtgacagttataatgttttttcat |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||| |
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| T |
50328196 |
ttcataacctaatttagagcaaacgttgttttacatttgaagcatagataatctttgtgttgttcttttactaaaagcgacaattataatgtttttccat |
50328295 |
T |
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| Q |
218 |
ctttttgaactgaaaactg |
236 |
Q |
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| T |
50328296 |
ctttttaaactgaaaactg |
50328314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 50328082 - 50328189
Alignment:
| Q |
118 |
ttcataacctaatctagagcaaacgttgttttacatttgaagcatagataacctttgtgttgttcttttactaaaagtgacagttataatgttttttcat |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
50328082 |
ttcataacctaatttagagcaaacgttgttttacatttgaagcatagataatctttgtgttgttcttttactaaaagcgacaattataatgttttttcat |
50328181 |
T |
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| Q |
218 |
ctttttga |
225 |
Q |
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|||||||| |
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| T |
50328182 |
ctttttga |
50328189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 50327979 - 50328031
Alignment:
| Q |
71 |
agtttcttaagttggttctgatattagactccctctttttgcatcaattcata |
123 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
50327979 |
agttgcttaagttggttctgatattagcctccctcttttcgcagcaattcata |
50328031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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