View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_low_18 (Length: 220)
Name: NF18875_low_18
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 40087155 - 40086968
Alignment:
| Q |
17 |
aatgctaatactcgatatattaattattacattagtattttcttcttcataaggattcaaactcatgtactttaattcattcgactattagtccaaacta |
116 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40087155 |
aatgttaatactcgatagattaattattacattagtattttcttcttcataaggattcaaattcatgtactttaattcattcgactattagtccaaacta |
40087056 |
T |
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| Q |
117 |
gttgagcagagctattcgacctgccacatttaattacactcaattgcttctatttctttaaattattacatatgtattcccgtctgtg |
204 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
40087055 |
gttgagcagagctattcgaactgccacatttaattacactcaattgcttctatttcattaaattattacatatgtattggcgtctgtg |
40086968 |
T |
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