View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18875_low_3 (Length: 550)

Name: NF18875_low_3
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18875_low_3
NF18875_low_3
[»] chr5 (16 HSPs)
chr5 (228-537)||(17032168-17032488)
chr5 (245-537)||(17042705-17043007)
chr5 (235-537)||(17048571-17048882)
chr5 (236-493)||(17036930-17037197)
chr5 (222-537)||(16994819-16995133)
chr5 (281-537)||(17018054-17018313)
chr5 (64-223)||(17043108-17043266)
chr5 (453-534)||(16988137-16988218)
chr5 (458-535)||(17017288-17017365)
chr5 (151-225)||(17037268-17037342)
chr5 (64-136)||(17039953-17040025)
chr5 (327-392)||(17002977-17003043)
chr5 (275-310)||(17040110-17040145)
chr5 (95-182)||(17042742-17042829)
chr5 (100-166)||(17002892-17002958)
chr5 (328-392)||(17025378-17025443)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 228 - 537
Target Start/End: Complemental strand, 17032488 - 17032168
Alignment:
Q  228 actctgcttttccttggaagaaaattaactgtatttttcttcataac----atttacttgatttttacaattcatacatgacaggaccatcaaaagttga 323  Q
    |||||||||||| |||||| | ||| ||| ||| |||| |||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17032488 actctgcttttctttggaatataatcaaccgtaattttattcataattaatatttacttgatttttacaattcatacatgacaggaccatcaaaagttga 17032389  T
Q  324 ggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaattc 423  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17032388 ggagggaccttttgtaaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttggtttcgtagaatgatattcccaattc 17032289  T
Q  424 ctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacg 516  Q
    |||||||||||||||||||||||||||||       |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17032288 ctatggccaaacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcacatatatttgtactttgaacacg 17032189  T
Q  517 atatctttactatatatagaa 537  Q
    |||||||||||||||||||||    
T  17032188 atatctttactatatatagaa 17032168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 245 - 537
Target Start/End: Complemental strand, 17043007 - 17042705
Alignment:
Q  245 aagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttttgtgaaatt 344  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||| | |||    
T  17043007 aagaaaattaactgtatttttcttaataacatttacttgatttttatgattcatacatgacaggaccatcaaaagttgaggaggtaccatttgttagatt 17042908  T
Q  345 ttgaagaatttaatcactttaccgttatggacatcacaagaagaata---tatttgatttcgtagaatgatattcccaattcctatggccaaacatcctg 441  Q
    |||||||||| ||||||||||| | || ||| |||||||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  17042907 ttgaagaattgaatcactttactgctacggatatcacaagaagaatatattatttgatttcatataatgatattcccaattcctattgccaaacatcctg 17042808  T
Q  442 actatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatata 534  Q
    |||||||||||       |||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| | |||||||||||    
T  17042807 actatgttcatttttcaatgatagtagactaactttataaatggccacacaaattttcacgtatctttgtactttgaacccaatatttgtactatatata 17042708  T
Q  535 gaa 537  Q
    |||    
T  17042707 gaa 17042705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 235 - 537
Target Start/End: Complemental strand, 17048882 - 17048571
Alignment:
Q  235 ttttccttggaagaaaattaactgtatttttcttc--ataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggacc 332  Q
    |||||||||||| |||||||||  | ||||||||   ||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||| |||    
T  17048882 ttttccttggaataaaattaaccttgtttttctttttataacatttacttgaattttacaattcatgcatggctggaccatcaaaagttgagaaggtacc 17048783  T
Q  333 ttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaattcctatggcca 432  Q
    |||||| | |||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  17048782 ttttgttagattttgaagatttgaatcactttaccgctacggacatcacaagaagaatatatttgatttcatataatgatattcccaattcctattgcca 17048683  T
Q  433 aacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatcttta 525  Q
    ||||||||||||||||||||       |||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| | ||    
T  17048682 aacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcacgtatctttgtactttgaacccaatatttgta 17048583  T
Q  526 ctatatatagaa 537  Q
    ||||||||||||    
T  17048582 ctatatatagaa 17048571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 236 - 493
Target Start/End: Complemental strand, 17037197 - 17036930
Alignment:
Q  236 tttccttggaagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttt 335  Q
    ||||| || |||||||||||||||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||||    
T  17037197 tttccatgaaagaaaattaactgtatttttcttaatagcatttacttgatttttatgagtcatacatgacaggaccatcaaaagtttaggaggtaccttt 17037098  T
Q  336 tgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaata---tatttgatttcgtagaatgatattcccaattcctatggcca 432  Q
    |||   |||||||||| || ||||||||||||  ||||||||||||||||||||||   ||||||||||| || ||||||||||||||||||||| ||||    
T  17037097 tgttggattttgaagatttgaatcactttaccactatggacatcacaagaagaatatattatttgatttcatataatgatattcccaattcctattgcca 17036998  T
Q  433 aacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttca 493  Q
    ||||||||||||||||||||       |||||||  |||||||||||||||||||||| |||||||||    
T  17036997 aacatcctgactatgttcatttttcaatgatagctgactaactttataaatggccacaaaaattttca 17036930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 222 - 537
Target Start/End: Complemental strand, 16995133 - 16994819
Alignment:
Q  222 attataactctgcttttccttggaagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagtt 321  Q
    ||||| ||||||| |||| |||||| ||||| ||||||||||||||| |||||||||  |  |||||| |||||| | ||||||||||||||||||||||    
T  16995133 attatgactctgcatttctttggaataaaatgaactgtatttttctt-ataacatttgat--attttt-caattcttgcatgacaggaccatcaaaagtt 16995038  T
Q  322 gaggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaat 421  Q
     || ||| ||||||||| | |||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||  | ||| ||| | |||||    
T  16995037 tag-aggtaccttttgttagattttgaagatttgaatcactttaacgttacggacatcacaagaagaatatatttgatttc--ataataata-taccaat 16994942  T
Q  422 tcctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaaca 514  Q
    |||| | ||||||||||||||||||||||||       |||||| | ||||||||||||||||||||||||||||||||  ||| ||||| ||||||||     
T  16994941 tccttttgccaaacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcaagtatctttgtgctttgaacc 16994842  T
Q  515 cgatatctttactatatatagaa 537  Q
    | |||| | || |||||||||||    
T  16994841 caatatttgtaatatatatagaa 16994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 281 - 537
Target Start/End: Complemental strand, 17018313 - 17018054
Alignment:
Q  281 ttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatca 380  Q
    |||||||||||| ||| | |||||||||||||||||||||| || ||| ||||||||| | |||||||||| || |||||||||| ||||| ||||||||    
T  17018313 ttgatttttacacttcttgcatgacaggaccatcaaaagtttag-aggtaccttttgttagattttgaagatttgaatcactttaacgttacggacatca 17018215  T
Q  381 caagaagaatatatttgatttcgtagaatgatattcccaattcctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttata 473  Q
    ||||||||||||||||||||||  | ||| ||| | ||||||||| | ||||||||||||||||||||||||       |||||| | ||||||||||||    
T  17018214 caagaagaatatatttgatttc--ataataata-taccaattccttttgccaaacatcctgactatgttcattgttcaatgatagtagactaactttata 17018118  T
Q  474 aatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatatagaa 537  Q
    ||||||||||||||||||||  ||| ||||| |||||||| | |||| | || |||||||||||    
T  17018117 aatggccacacaaattttcaagtatctttgtgctttgaacccaatatttgtaatatatatagaa 17018054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 17043266 - 17043108
Alignment:
Q  64 ttttttcgtttcataatgatagataccccccattcatattgtcaaacatcgtgaccatgttcatttttcattgataaaaaagtaaacttatgcatggcca 163  Q
    ||||||| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| || |  |  ||| |||||||||||||    
T  17043266 ttttttcatttcataatcatatatatccccaattcatattgtcaaacatcgtgaccatgttcatttttcattgttagagta-aaaatttatgcatggcca 17043168  T
Q  164 cacaaattttgacgtatctaacattgataggtaaataacttcattgataatatgtaaaat 223  Q
    |||||||||| |||||||||||||||| ||  ||||||||||||||| |  |||||||||    
T  17043167 cacaaattttcacgtatctaacattgaaagaaaaataacttcattgaaatcatgtaaaat 17043108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 16988218 - 16988137
Alignment:
Q  453 tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatata 534  Q
    |||| |||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||||    
T  16988218 tgattgcaaacaaactttatacatggccacacaaatttacacgtatatttgtactttgaacacaatatatgtactatatata 16988137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 17017365 - 17017288
Alignment:
Q  458 gcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatatag 535  Q
    |||||| ||||||||| | | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  17017365 gcaaacaaactttatacaagaccacacaaattttcacgtatatttgtactttgaacacaatatctgtactatatatag 17017288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 17037342 - 17037268
Alignment:
Q  151 ttatgcatggccacacaaattttgacgtatctaacattgataggtaaataacttcattgataatatgtaaaatta 225  Q
    |||||||||||||| |||||||| |||||||||||||||| ||  ||||||||||||| ||| ||||||||||||    
T  17037342 ttatgcatggccacccaaattttcacgtatctaacattgaaagaaaaataacttcattaatattatgtaaaatta 17037268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 17040025 - 17039953
Alignment:
Q  64 ttttttcgtttcataatgatagataccccccattcatattgtcaaacatcgtgaccatgttcatttttcattg 136  Q
    ||||||| |||||||||  || ||| |||| |||||||||||||||| ||||||||||||| |||||||||||    
T  17040025 ttttttcatttcataatcttatatatccccaattcatattgtcaaacgtcgtgaccatgtttatttttcattg 17039953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 17003043 - 17002977
Alignment:
Q  327 gggaccttttgtgaaattttgaagaatttaatcactttaccgttat-ggacatcacaagaagaatat 392  Q
    |||||||||| | | |||||||| | ||||| |||||||||||||| ||||||||||||||||||||    
T  17003043 gggaccttttcttagattttgaaaattttaagcactttaccgttatgggacatcacaagaagaatat 17002977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 17040145 - 17040110
Alignment:
Q  275 atttacttgatttttacaattcatacatgacaggac 310  Q
    |||||||||| |||||||||||||||||||||||||    
T  17040145 atttacttgaattttacaattcatacatgacaggac 17040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 17042829 - 17042742
Alignment:
Q  95 attcatattgtcaaacatcgtgaccatgttcatttttcattgataaaaaagtaaacttatgcatggccacacaaattttgacgtatct 182  Q
    |||| ||||| |||||||| |||| |||||||||||||| |||||  | | |||  ||||  ||||||||||||||||| ||||||||    
T  17042829 attcctattgccaaacatcctgactatgttcatttttcaatgatagtagactaactttataaatggccacacaaattttcacgtatct 17042742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 17002958 - 17002892
Alignment:
Q  100 tattgtcaaacatcgtgaccatgttcatttttcattgataaaaaagtaaacttatgcatggccacac 166  Q
    |||||||||||||  |||| |||||||||||||||||||  |||| |||  |||||||| |||||||    
T  17002958 tattgtcaaacattatgactatgttcatttttcattgatggaaaattaactttatgcattgccacac 17002892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Complemental strand, 17025443 - 17025378
Alignment:
Q  328 ggaccttttgtgaaattttgaagaatttaatcactttaccgttatgg-acatcacaagaagaatat 392  Q
    ||||||||| | | |||||||| | ||||| |||||||| ||||||| ||||||||||||||||||    
T  17025443 ggaccttttcttagattttgaaaattttaagcactttacagttatgggacatcacaagaagaatat 17025378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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