View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18875_low_9 (Length: 341)
Name: NF18875_low_9
Description: NF18875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18875_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 322
Target Start/End: Original strand, 8328052 - 8328371
Alignment:
| Q |
3 |
gaacatatccaaaacaatcacgcgattaaatctgaatttcaaaagtcctccatctaactaaagatcccatcaaaataaagtgtttgtgtcatcttccacc |
102 |
Q |
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| T |
8328052 |
gaacatatccgaaacaatcacgcgattaaatctgaatttcaaaagccctccatccgactaaagatcccatcaaaataaagtgtttgtgttatcttccacc |
8328151 |
T |
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| Q |
103 |
ttg-atgttattggtaaacaagcttccaacccccttcacctgccccacctccgatgctaatcaannnnnnnncaccaaactgaggtaaaaaggagagtct |
201 |
Q |
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| T |
8328152 |
ttgtatgttattggtaaacaagcttccaacccccttcacctgcccaaccttcgatgctaatcaatttttttccaccaaactgaggtaaaaaggagagtct |
8328251 |
T |
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| Q |
202 |
atggaaaaataaacattaannnnnnnagtcgtnnnnnnncataacttattttataatatttcatgaacgaggatagcctatgatgcttattgctaaatac |
301 |
Q |
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| T |
8328252 |
atggaaaaataaacattaatttttttagtcataaaaaaa-aaaacttattttataatatttcatgaacgaggatagcctatgatgcttattgccaagtac |
8328350 |
T |
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| Q |
302 |
aaccctaagttctgccctaat |
322 |
Q |
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||||||||| ||||||||||| |
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| T |
8328351 |
aaccctaagctctgccctaat |
8328371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 36019962 - 36019916
Alignment:
| Q |
49 |
cctccatctaactaaagatcccatcaaaataaagtgtttgtgtcatc |
95 |
Q |
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| T |
36019962 |
cctccatctaaccaaggatcacaccaaaataaagtgtttgtgtcatc |
36019916 |
T |
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