View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18876_high_1 (Length: 548)
Name: NF18876_high_1
Description: NF18876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18876_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Original strand, 3148205 - 3148729
Alignment:
| Q |
7 |
tgtcgaagaatatacacgtcttccaacaaaagtctcggtattgtattgagnnnnnnnnnnnnnnnnngcctgatcaatgcctgcataactaccaggatat |
106 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3148205 |
tgtcgaacaatgtacacgtcttccaacaaaagtctcggtattgtattgagttttttttttactttttgcctgatcaatgcctgcataactaccaggatat |
3148304 |
T |
|
| Q |
107 |
cacattttagaacacttaaccatttttctatttctacaccaatatgttctgtttcttaataatgtttatatttgtaatattcatttgagtcaatcatttt |
206 |
Q |
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| T |
3148305 |
cacattttagaacacttaaccatttttctatttctacaccaatatgttctgtttcttaataatgtttatatttgtaatattcatttgagtcaatcatttt |
3148404 |
T |
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| Q |
207 |
caggagcacccaagtttgacaaaatctgaaaagaagaatatatgtggactgatgaatgtcaagaaattgactgctgatgcatcggcacatgctgcacaga |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148405 |
caggagcacccaagtttgactaaatctgaaaagaagaatatatgtggactgatgaatgtcaagaaattgactgctgatgcatcggcacatgctgcacaga |
3148504 |
T |
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| Q |
307 |
acgaacgtcttccacttcgagttgtagtgcaggtcctatattttgaacaagttagagctgcagccagtgcccgagcatttgctaacagtccacgtgatcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148505 |
acgaacgtcttccacttcgagttgtagtgcaggtcctatattttgaacaagttagagctgcagccagtgcccgagcatttgctaacagtccacgtgatcc |
3148604 |
T |
|
| Q |
407 |
ttcacatgccctgataaacggagacgaggaatgtgagaaaacactgggagtgagctgccattccctcaacagacaaacaagtcgtttgaagattaaggat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148605 |
ttcacatgccctgataaacggagacgaggaatgtgagaaaacactgggagtgagctgccattccctcaacagacaaacaagtcgtttgaagattaaggat |
3148704 |
T |
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| Q |
507 |
gatgagtttcgtaagagcttgagat |
531 |
Q |
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| T |
3148705 |
gatgagtttcgtaagagcgtgagat |
3148729 |
T |
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