View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18876_low_2 (Length: 488)

Name: NF18876_low_2
Description: NF18876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18876_low_2
NF18876_low_2
[»] chr1 (30 HSPs)
chr1 (314-476)||(30252975-30253137)
chr1 (130-297)||(30252765-30252931)
chr1 (139-285)||(5558261-5558407)
chr1 (133-270)||(10907672-10907809)
chr1 (141-222)||(30745359-30745440)
chr1 (141-222)||(30766810-30766891)
chr1 (133-278)||(44107412-44107558)
chr1 (133-222)||(38859866-38859955)
chr1 (133-220)||(23908303-23908389)
chr1 (143-220)||(3346804-3346880)
chr1 (133-222)||(26835353-26835442)
chr1 (133-220)||(7742803-7742889)
chr1 (143-220)||(48392440-48392516)
chr1 (133-220)||(10156040-10156126)
chr1 (143-220)||(29149582-29149658)
chr1 (143-220)||(49902486-49902562)
chr1 (144-220)||(5975006-5975081)
chr1 (191-267)||(1106744-1106822)
chr1 (142-223)||(26511666-26511746)
chr1 (133-270)||(14796842-14796980)
chr1 (133-270)||(14805716-14805854)
chr1 (170-219)||(8430502-8430551)
chr1 (133-222)||(13131912-13132000)
chr1 (133-284)||(42456524-42456676)
chr1 (143-220)||(42517328-42517408)
chr1 (137-223)||(45968682-45968767)
chr1 (173-222)||(37189318-37189367)
chr1 (143-220)||(47022720-47022796)
chr1 (141-222)||(44462510-44462594)
chr1 (143-180)||(37189697-37189734)
[»] chr3 (31 HSPs)
chr3 (133-269)||(43347360-43347495)
chr3 (141-270)||(1781728-1781858)
chr3 (133-284)||(54546857-54547008)
chr3 (141-222)||(10839412-10839493)
chr3 (133-273)||(8926730-8926870)
chr3 (143-251)||(20382505-20382613)
chr3 (145-270)||(33103710-33103835)
chr3 (143-220)||(13856117-13856193)
chr3 (143-251)||(19649406-19649515)
chr3 (145-284)||(22845398-22845536)
chr3 (143-270)||(3178671-3178797)
chr3 (133-239)||(48206852-48206957)
chr3 (143-220)||(5391475-5391551)
chr3 (133-220)||(8950528-8950614)
chr3 (143-220)||(21853215-21853291)
chr3 (143-220)||(23467528-23467604)
chr3 (143-220)||(40845951-40846027)
chr3 (145-270)||(36539598-36539724)
chr3 (145-271)||(791782-791906)
chr3 (143-220)||(44995002-44995079)
chr3 (133-285)||(51336161-51336313)
chr3 (143-220)||(32352865-32352941)
chr3 (143-222)||(47889740-47889820)
chr3 (142-284)||(6280392-6280534)
chr3 (145-218)||(46685819-46685891)
chr3 (152-251)||(47315147-47315246)
chr3 (143-286)||(19644361-19644506)
chr3 (176-251)||(36826021-36826096)
chr3 (136-285)||(50663092-50663235)
chr3 (164-207)||(54378613-54378656)
chr3 (133-173)||(27642724-27642764)
[»] chr6 (15 HSPs)
chr6 (133-251)||(28750674-28750792)
chr6 (133-285)||(34103638-34103789)
chr6 (133-222)||(13103142-13103231)
chr6 (143-286)||(11279493-11279634)
chr6 (143-284)||(11212625-11212765)
chr6 (143-220)||(14309832-14309908)
chr6 (141-222)||(27863715-27863795)
chr6 (143-220)||(9231888-9231964)
chr6 (143-220)||(24694685-24694761)
chr6 (176-262)||(24500767-24500853)
chr6 (143-220)||(13627558-13627634)
chr6 (143-212)||(1727967-1728035)
chr6 (170-222)||(7517031-7517083)
chr6 (133-173)||(24497598-24497638)
chr6 (187-220)||(11084628-11084661)
[»] chr5 (27 HSPs)
chr5 (141-270)||(11856261-11856391)
chr5 (143-222)||(9738017-9738096)
chr5 (143-286)||(8456997-8457141)
chr5 (133-222)||(614416-614505)
chr5 (143-251)||(10081131-10081239)
chr5 (133-222)||(42119637-42119726)
chr5 (133-239)||(6174743-6174850)
chr5 (133-217)||(39862511-39862594)
chr5 (143-220)||(23218503-23218579)
chr5 (145-222)||(25560363-25560440)
chr5 (143-220)||(37169067-37169143)
chr5 (143-220)||(38397616-38397692)
chr5 (143-270)||(33271304-33271431)
chr5 (133-212)||(10115185-10115264)
chr5 (133-270)||(27916105-27916244)
chr5 (143-220)||(15631631-15631708)
chr5 (143-220)||(16618604-16618680)
chr5 (133-222)||(36769098-36769186)
chr5 (143-251)||(29491448-29491554)
chr5 (143-217)||(6257444-6257517)
chr5 (133-221)||(29790243-29790329)
chr5 (176-286)||(10052599-10052710)
chr5 (151-222)||(3341162-3341232)
chr5 (141-215)||(10052532-10052606)
chr5 (145-223)||(15475430-15475508)
chr5 (145-197)||(19322058-19322110)
chr5 (167-269)||(22903226-22903329)
[»] chr4 (28 HSPs)
chr4 (144-285)||(322584-322726)
chr4 (133-251)||(17888574-17888692)
chr4 (133-222)||(9742557-9742646)
chr4 (130-222)||(35322725-35322817)
chr4 (141-211)||(10094425-10094495)
chr4 (133-283)||(46473948-46474098)
chr4 (143-222)||(20818582-20818661)
chr4 (133-215)||(16338237-16338318)
chr4 (143-220)||(1535789-1535865)
chr4 (141-222)||(12792263-12792344)
chr4 (143-220)||(34241011-34241087)
chr4 (133-273)||(50328759-50328900)
chr4 (143-220)||(52632536-52632612)
chr4 (133-220)||(25954768-25954854)
chr4 (143-222)||(31377405-31377484)
chr4 (143-220)||(35018954-35019030)
chr4 (143-220)||(36012219-36012295)
chr4 (143-220)||(37801298-37801374)
chr4 (143-220)||(46583575-46583651)
chr4 (143-220)||(49284375-49284451)
chr4 (133-225)||(19124762-19124854)
chr4 (141-193)||(47084056-47084108)
chr4 (176-222)||(24991968-24992014)
chr4 (141-273)||(54090144-54090276)
chr4 (145-201)||(5780790-5780846)
chr4 (143-222)||(11054468-11054550)
chr4 (176-220)||(16338311-16338354)
chr4 (145-222)||(33982017-33982096)
[»] chr7 (20 HSPs)
chr7 (143-285)||(33057691-33057833)
chr7 (133-284)||(10334130-10334282)
chr7 (133-220)||(29555963-29556049)
chr7 (143-220)||(32876564-32876640)
chr7 (143-222)||(19334594-19334674)
chr7 (143-220)||(10576691-10576767)
chr7 (143-220)||(34259536-34259612)
chr7 (143-220)||(34707134-34707210)
chr7 (143-220)||(44164777-44164853)
chr7 (144-220)||(24320474-24320549)
chr7 (133-222)||(17303138-17303228)
chr7 (143-220)||(29238177-29238253)
chr7 (143-220)||(29981147-29981223)
chr7 (142-215)||(9770682-9770754)
chr7 (145-286)||(41853081-41853226)
chr7 (164-285)||(26284433-26284556)
chr7 (176-284)||(2702287-2702395)
chr7 (133-193)||(15017817-15017877)
chr7 (170-223)||(23032186-23032239)
chr7 (197-285)||(25128163-25128251)
[»] scaffold0045 (1 HSPs)
scaffold0045 (141-269)||(34484-34612)
[»] chr8 (17 HSPs)
chr8 (151-269)||(34697431-34697550)
chr8 (133-223)||(43282875-43282965)
chr8 (143-220)||(26021413-26021490)
chr8 (130-270)||(19334751-19334890)
chr8 (143-222)||(42072444-42072522)
chr8 (143-220)||(21525376-21525452)
chr8 (133-270)||(10112013-10112151)
chr8 (133-223)||(21488081-21488170)
chr8 (143-220)||(22324614-22324690)
chr8 (143-220)||(35806812-35806888)
chr8 (143-222)||(24065289-24065367)
chr8 (133-220)||(33934393-33934479)
chr8 (143-220)||(42013890-42013966)
chr8 (142-193)||(2271239-2271290)
chr8 (143-270)||(16819007-16819137)
chr8 (143-188)||(16523155-16523200)
chr8 (176-209)||(23756566-23756599)
[»] chr2 (20 HSPs)
chr2 (145-260)||(23685406-23685521)
chr2 (143-222)||(1387322-1387400)
chr2 (133-273)||(40780018-40780160)
chr2 (143-220)||(29846460-29846536)
chr2 (141-285)||(41674738-41674883)
chr2 (133-220)||(19181566-19181652)
chr2 (145-220)||(40277324-40277398)
chr2 (141-222)||(14539736-14539817)
chr2 (143-220)||(14942078-14942154)
chr2 (133-285)||(28321727-28321880)
chr2 (130-222)||(33009687-33009780)
chr2 (143-220)||(42769792-42769868)
chr2 (143-213)||(6318492-6318563)
chr2 (161-283)||(32486198-32486320)
chr2 (143-220)||(14186472-14186548)
chr2 (145-222)||(43139761-43139839)
chr2 (145-216)||(3597903-3597973)
chr2 (143-222)||(3956587-3956666)
chr2 (145-217)||(25665244-25665316)
chr2 (143-239)||(2888039-2888135)
[»] scaffold0079 (2 HSPs)
scaffold0079 (133-215)||(54542-54623)
scaffold0079 (176-220)||(54506-54549)
[»] scaffold0086 (1 HSPs)
scaffold0086 (133-239)||(20855-20953)
[»] scaffold0016 (2 HSPs)
scaffold0016 (198-269)||(85479-85550)
scaffold0016 (145-185)||(85552-85592)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 314 - 476
Target Start/End: Original strand, 30252975 - 30253137
Alignment:
Q  314 atcatcactatccacattcaaaccattattttcgttgacaacaaaattataaagttagactattatgtaacccgtgcattgataatatttcaatttttct 413  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30252975 atcatcactatccacattaaaaccattattttcgttgacaacaaaattataaagttagactattatgaaacccgtgcattgataatatttcaatttttct 30253074  T
Q  414 agttacaccgaagtattttatttattacatcccaaaatgacaaaaacacctctaattcttctc 476  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30253075 agttacactgaagtattttatttattacatcccaaaatgacaaaaacacctctaattcttctc 30253137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 297
Target Start/End: Original strand, 30252765 - 30252931
Alignment:
Q  130 atataaattcttctgaatttctt-atataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctga 228  Q
    ||||||||| |||||||||| || ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||  |  |    
T  30252765 atataaatttttctgaatttttttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgtaaaccccta 30252864  T
Q  229 taaatatgttggaatttatttttcctagactttataataatcttgtctccaccactgaaagccactact 297  Q
    ||||||||||||||||| |||| ||   ||||||||||||||||| |||| ||||| ||||||||||||    
T  30252865 taaatatgttggaatttgttttccc--cactttataataatcttggctccgccacttaaagccactact 30252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 5558407 - 5558261
Alignment:
Q  139 cttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgtt 238  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| |||| ||  |||||||||||    
T  5558407 cttccgaatttcttatataaacccctataaattggacaatttctttagat-ttttgattatttgcttgcaatttcatatataaactcctataaatatgtt 5558309  T
Q  239 ggaatttattttt-cctagactttataataatcttgtctccaccactg 285  Q
    | ||||| ||||| || |||||||||||||||| ||  ||||||||||    
T  5558308 gtaatttttttttgcccagactttataataatcctggttccaccactg 5558261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 10907672 - 10907809
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| |  |  |||||    
T  10907672 taaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattatttgcttgcaatttcttatgtagacacctataaa 10907771  T
Q  233 tatgttggaatttatttttcctagactttataataatc 270  Q
    | ||||| ||||| |||| || ||||||| ||||||||    
T  10907772 tgtgttgcaattttttttgcccagactttgtaataatc 10907809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 30745440 - 30745359
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  30745440 tctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30745359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 30766891 - 30766810
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  30766891 tctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30766810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 44107412 - 44107558
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||| ||| ||||||||| |||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||||  || |||||    
T  44107412 taaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaaccttataaa 44107511  T
Q  233 tatgttggaatttattttt-cctagactttataataatcttgtctcc 278  Q
    | ||||| || |||||||| ||  |||||||||||||| ||| ||||    
T  44107512 tgtgttgcaaattatttttgcccggactttataataatgttgactcc 44107558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 38859955 - 38859866
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  38859955 taaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttttattatttgcttgcaatttcttatgtaaa 38859866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 23908389 - 23908303
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||||    
T  23908389 taaattcctatgaatttcttatataaatccctataaattggacaatttctttatgtttttt-attatttgcttgcaatttcttatgta 23908303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 3346880 - 3346804
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  3346880 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 3346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 26835442 - 26835353
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| | |||||||||||||||||  ||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  26835442 taaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttctcatgtaaa 26835353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 7742803 - 7742889
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||| ||| ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  7742803 taaatccttatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 7742889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 48392440 - 48392516
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||||||||||||||||  |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  48392440 tgaatttcttatataaatccctataaattgggcaatttcattacatttttt-attatttgcttgcaatttcttatgta 48392516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 10156040 - 10156126
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | |||||||||||||||||   |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10156040 taaattcctatgaatttcttatataaacttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 10156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 29149582 - 29149658
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  ||||||||||  |||||| ||||||||||||||||||||||||||    
T  29149582 tgaatttcttatataaacccctataaattgggcaatttctttacgtttttt-attatttgcttgcaatttcttatgta 29149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 49902562 - 49902486
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||| ||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  49902562 tgaatttcttatataaacccctataaatagggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 49902486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 5975081 - 5975006
Alignment:
Q  144 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5975081 gaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 5975006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 1106822 - 1106744
Alignment:
Q  191 tttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-gaatttattttt-cctagactttataata 267  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||  ||||| ||||| ||||||||||||||||    
T  1106822 tttgattatttgcttgcaatttcttatgtaaattcttataaatgtgttgctaatttttttttacctagactttataata 1106744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 26511666 - 26511746
Alignment:
Q  142 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||||| ||| |||||||||| ||||||    
T  26511666 ctgaatttcttatataaattcctgtaaattgaataatttcttta-aatttttgattatttacttacaatttcttacgtaaat 26511746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 14796980 - 14796842
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||| |  | |||||||| |   ||| |||||||||||| || ||||||||||||||||||||||||||  |  |||||    
T  14796980 taaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtataaa 14796881  T
Q  233 tatgttggaa-tttatttttcctagactttataataatc 270  Q
    | | ||| || ||| |||| || ||||||||||||||||    
T  14796880 tgtattgcaattttgttttgcccagactttataataatc 14796842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 14805854 - 14805716
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||| |  | |||||||| |   ||| |||||||||||| || ||||||||||||||||||||||||||  |  |||||    
T  14805854 taaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtataaa 14805755  T
Q  233 tatgttggaa-tttatttttcctagactttataataatc 270  Q
    | | ||| || ||| |||| || ||||||||||||||||    
T  14805754 tgtattgcaattttgttttgcccagactttataataatc 14805716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 8430502 - 8430551
Alignment:
Q  170 ttggataatttctttagattttttgattatttgcttgcaatttcttatgt 219  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8430502 ttggataatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 13132000 - 13131912
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||| |||||||||||  |||||  |||| | ||||||||||||||||||||    
T  13132000 taaattcctctaaattttttatataaatcactataaattggacaatttctttag-ctttttacttatctccttgcaatttcttatgtaaa 13131912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 42456676 - 42456524
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat-tctgataa 231  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||| |    || ||||| | |||||||||||||||||||||  |  ||||    
T  42456676 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaatttcttatgtaaatcccctataa 42456577  T
Q  232 atatgttggaatttatttttcctagactttataataatcttgtctccaccact 284  Q
    || ||||| ||||| |||||||  ||| ||| ||||||| || |||| |||||    
T  42456576 atgtgttgcaatttttttttcccggaccttacaataatcctggctccgccact 42456524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 42517328 - 42517408
Alignment:
Q  143 tgaatttcttatataaat----ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||     |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42517328 tgaatttcttatataaacaaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 45968767 - 45968682
Alignment:
Q  137 ttcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    |||| |||||||| ||||||||   | ||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  45968767 ttctcctgaattttttatataatctcttataaattggacaatttttatagattttt-gattatttacttgcaatttcttatgtaaat 45968682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 37189367 - 37189318
Alignment:
Q  173 gataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  37189367 gataatttatttaaattttttgattatttgtttgcaatttcttatgtaaa 37189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 47022796 - 47022720
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||  |||||||||| |  |||||||||| ||||||| ||||||| |||| |||||||||||||    
T  47022796 tgaatttcttatataaactcctataaattaggcaatttctttatatttttt-attatttacttgtaatttcttatgta 47022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 44462510 - 44462594
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttaga---ttttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||| ||| | ||||||||| || ||||||||  ||   |||||||||||||| |||||| |||||||| ||||    
T  44462510 tctgaatttcttatacaaacctctataaattagacaatttcttctgatttttttttgattatttacttgcagtttcttatataaa 44462594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 37189734 - 37189697
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataattt 180  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  37189734 tgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 43347360 - 43347495
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  || ||||     
T  43347360 taaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccct-ataat 43347458  T
Q  233 tatgttggaatttatttttcctagactttataataat 269  Q
    ||||||| ||||| |||| || | |||||||||||||    
T  43347459 tatgttgcaattttttttgcccaaactttataataat 43347495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 1781858 - 1781728
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 240  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||  |  |||||| |||||     
T  1781858 tctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaatttcgtatgtaaacccctataaatgtgttgc 1781759  T
Q  241 aatttattttt-cctagactttataataatc 270  Q
    ||||| ||||| || ||||||||||||||||    
T  1781758 aatttttttttgcccagactttataataatc 1781728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 54547008 - 54546857
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |  |||||    
T  54547008 taaattcctttgaatttcttatataaacccctataaattggacaatttctttagat-ttttgattatttgcttacaatttcttatgtaaatccctataaa 54546910  T
Q  233 tatgttggaa-tttatttttcctagactttataataatcttgtctccaccact 284  Q
    | ||||  || ||| ||||| | |||||||||||||||| || |||| |||||    
T  54546909 tgtgttacaattttttttttaccagactttataataatcctggctccgccact 54546857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 10839412 - 10839493
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10839412 tctgaatttcttatataaacctctataaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 10839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 8926870 - 8926730
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||| ||  || |||||    
T  8926870 taaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttcttatgttaacccttataaa 8926771  T
Q  233 tatgttggaatttatttttcctagactttataataatcttg 273  Q
    | ||||| |  || ||||||| |  ||||||||||||||||    
T  8926770 tgtgttgcagattttttttcccaagctttataataatcttg 8926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 20382613 - 20382505
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||  |||| ||    
T  20382613 tgaatttcttatataaacccctataaattgggaaatttctttagatttttttattatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T
Q  243 tttattttt 251  Q
    ||| |||||    
T  20382513 ttttttttt 20382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 33103835 - 33103710
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-gaat 243  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||| || |||||| |||||  |||    
T  33103835 aatttcttatataagtccctataaattggataatttatttaaatttttt-attatttgcttgtaatttcttatgtaaatccttataaatgtgttgcaaat 33103737  T
Q  244 ttatttttcctagactttataataatc 270  Q
    || |||| || | ||||||||||||||    
T  33103736 tttttttacccaaactttataataatc 33103710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 13856193 - 13856117
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  13856193 tgaatttcttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 13856117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 19649406 - 19649515
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagatttttt-gattatttgcttgcaatttcttatgtaaattctgataaatatgttgga 241  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |  |||||| ||||| |    
T  19649406 tgaatttcttatataaacccttataaattggacaatttctttagattttttggattatttgcttgcaatttcttatgtaattccctataaatgtgttgca 19649505  T
Q  242 atttattttt 251  Q
    |||| |||||    
T  19649506 attttttttt 19649515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 22845398 - 22845536
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 244  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||| |||| ||||  || |||||||||| | ||||    
T  22845398 aatttcttatataaacccctataaatttgacaatttctttagatttttt-attatttgcttgcaattttttatataaaccct-ataaatatgtcgtaatt 22845495  T
Q  245 tattttt-cctagactttataataatcttgtctccaccact 284  Q
    | |||||  |||||||||||||||||| || |||| |||||    
T  22845496 tctttttatctagactttataataatcctgactccgccact 22845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 3178797 - 3178671
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||||| |||||||||||  ||||||||||| ||||||  |||||||||||||||||| |||||||| ||  |||||||||||| ||    
T  3178797 tgaatttcttatataaatctctataaattgggcaatttctttagtttttttt-ttatttgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T
Q  243 tttatttttcctagactttataataatc 270  Q
    ||| ||||  | |||||||| |||||||    
T  3178698 ttttttttgtccagactttacaataatc 3178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 48206957 - 48206852
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||  || |||||    
T  48206957 taaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaaacacttataaa 48206859  T
Q  233 tatgttg 239  Q
    | |||||    
T  48206858 tgtgttg 48206852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 5391551 - 5391475
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5391551 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 5391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 8950528 - 8950614
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | |||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||| |||||||||||||    
T  8950528 taaattcctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgaaatttcttatgta 8950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 21853291 - 21853215
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21853291 tgaatttcttatataaaaccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 21853215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 23467528 - 23467604
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23467528 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23467604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 40845951 - 40846027
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40845951 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40846027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 36539724 - 36539598
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 244  Q
    ||||||||||||||  |||||||||||||  |||||||||| |||||||||||||||| |||||||||| ||||||||  |  |||||| ||||| ||||    
T  36539724 aatttcttatataatcccctataaattgggcaatttctttaaattttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaatt 36539625  T
Q  245 tatttt-tcctagactttataataatc 270  Q
    | ||||  || ||||||| ||||||||    
T  36539624 ttttttcgcccagactttgtaataatc 36539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 271
Target Start/End: Complemental strand, 791906 - 791782
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 244  Q
    |||||||||||||||| |||||||||||  ||||||||||| ||||||||||||||   ||| |||||||||||||||  |  || ||| ||||| ||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttctttatattttttgattatt---ttgtaatttcttatgtaaacacctattaatgtgttgcaatt 791810  T
Q  245 tattttt-cctagactttataataatct 271  Q
    | ||||| || |||||||||||||||||    
T  791809 tttttttgcccagactttataataatct 791782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 44995002 - 44995079
Alignment:
Q  143 tgaatttcttatataaatccct-ataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||| |||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44995002 tgaatttcttatataaaccccttataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44995079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 285
Target Start/End: Complemental strand, 51336313 - 51336161
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa-ttctgataa 231  Q
    |||||||| |||||||| |||||||||||  |||||||| || |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||| ||||    
T  51336313 taaattctcctgaattttttatataaatctttataaatttgacaatttctttaaatttttt-attatttacttgcaatttcttacgtaaacttct-ataa 51336216  T
Q  232 atatgttg-gaatttatttttcctagactttataataatcttgtctccaccactg 285  Q
    || |||||  ||||| |||| || | | |||||||||||  || |||||||||||    
T  51336215 atgtgttgtaaattttttttgcccaaattttataataattatggctccaccactg 51336161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 32352941 - 32352865
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||| ||||||||||||||    
T  32352941 tgaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttacaatttcttatgta 32352865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 47889820 - 47889740
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttg-caatttcttatgtaaa 222  Q
    |||||||||||||||||| ||||||||||||  |||||||||| ||||||| ||||||| |||| |||||||| |||||||    
T  47889820 tgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaa 47889740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 6280392 - 6280534
Alignment:
Q  142 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-g 240  Q
    |||||||||||||||||| | ||||||||| || ||||| |||||| |||||||| |||||||||| |||| |||||||||   | |||||| |||||      
T  6280392 ctgaatttcttatataaacctctataaatttgacaatttatttaga-tttttgataatttgcttgccattttttatgtaaacctttataaatgtgttgca 6280490  T
Q  241 aatttatttttcctagactttataataatcttgtctccaccact 284  Q
    ||||| ||||  | |||||||||||||||| || |||| |||||    
T  6280491 aattttttttgtccagactttataataatcctggctccgccact 6280534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 46685819 - 46685891
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatg 218  Q
    |||||||||||||||  |||||||||| || |||||||||| ||||||| |||||||| |||||||||||||||    
T  46685819 aatttcttatataaactcctataaatttgacaatttctttatatttttt-attatttgtttgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 47315147 - 47315246
Alignment:
Q  152 tatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt 251  Q
    |||||||| | ||| |||||| | |||||| |||  ||||||||||||||  ||||||||||||||||||| ||  |||||||||||| ||||| |||||    
T  47315147 tatataaacctctaaaaattgaacaatttccttaatttttttgattatttatttgcaatttcttatgtaaactcctataaatatgttgcaattttttttt 47315246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 19644361 - 19644506
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttcttt-agattttttg-attatttgcttgcaatttcttatgtaaattctgataaatatgttgg 240  Q
    ||||||| |||||||||||  ||||||||| | ||||| ||| |||||||||| |||||||| |||||||||||||||||| | |  |||||| ||||      
T  19644361 tgaattttttatataaatctttataaattgaacaattttttttagattttttggattatttgattgcaatttcttatgtaattccctataaatgtgttac 19644460  T
Q  241 aatttatttttcctagactttataataatcttgtctccaccactga 286  Q
    ||||| |||| ||   |||||| ||||||| || |||| |||||||    
T  19644461 aattttttttgcccgaactttacaataatcctgactccgccactga 19644506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 36826021 - 36826096
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt 251  Q
    |||||||||| ||||||| || ||||||||||| |||||||||||||  |  |||||| ||||| ||||| |||||    
T  36826021 aatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgttgcaattttttttt 36826096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 50663235 - 50663092
Alignment:
Q  136 attcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatat 235  Q
    |||| ||| ||||||||||||||| || ||||||||| | |||||||||  ||||||||        ||| |||||||||||||||| ||  |||||| |    
T  50663235 attcctctaaatttcttatataaacccttataaattgaaaaatttctttgtattttttg--------cttccaatttcttatgtaaactcctataaatgt 50663144  T
Q  236 gttggaatttattttt--cctagactttataataatcttgtctccaccactg 285  Q
    | || || || |||||  || ||||||||||||||||||| |||| ||||||    
T  50663143 gatgcaaatttttttttgcccagactttataataatcttggctccgccactg 50663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 54378656 - 54378613
Alignment:
Q  164 tataaattggataatttctttagattttttgattatttgcttgc 207  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||    
T  54378656 tataaattggacaatttatttagattttttgattatttgtttgc 54378613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 27642764 - 27642724
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattgg 173  Q
    ||||| ||| |||||||||||||||||||| ||||||||||    
T  27642764 taaatccttttgaatttcttatataaatccttataaattgg 27642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 28750674 - 28750792
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||||  ||||||||||||||||||| ||||||||||||||| ||| |||||    
T  28750674 taaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgattatttgcttgtaatttcttatgtaaactcttataaa 28750773  T
Q  233 tatgttggaatttattttt 251  Q
    | ||||| ||||| |||||    
T  28750774 tgtgttgcaattttttttt 28750792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 133 - 285
Target Start/End: Complemental strand, 34103789 - 34103638
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||||| || ||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||   |  ||||    
T  34103789 taaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagatttttt-attatttgtttgcaatttcttatgtaaacctttgtaaa 34103691  T
Q  233 tatgttggaatttatttttcctagactttataataatcttgtctccaccactg 285  Q
    | ||||| |||||||||| ||||| ||||||||||||| || |||| ||||||    
T  34103690 tgtgttgcaatttattttgcctaggctttataataatcctggctccgccactg 34103638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 13103142 - 13103231
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||||||||||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  13103142 taaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgcaatttctaatgtaaa 13103231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 11279634 - 11279493
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat-tctgataaatatgttgga 241  Q
    ||||||| |||||||||| | |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||| |    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaatctct-ataaatgtgttgca 11279537  T
Q  242 atttatttttcctagactttataataatcttgtctccaccactga 286  Q
    |||| |||| || || ||||||||||||  || ||||||||||||    
T  11279536 attt-ttttccccaggctttataataattctggctccaccactga 11279493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 11212765 - 11212625
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||| || ||||||||||||||||||||  |||||||||||||||||  |||||||||||| ||||||||||||||||||  |||||| |||||  |    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagattttta-attatttgcttgtaatttcttatgtaaattcctataaatgtgttgcga 11212667  T
Q  243 tttatttttcctagactttataataatcttgtctccaccact 284  Q
    ||| ||||||| |  | ||||||||||  || ||||||||||    
T  11212666 tttttttttcccaatccttataataattctggctccaccact 11212625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 14309832 - 14309908
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14309832 tgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14309908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 27863795 - 27863715
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  27863795 tctgaatttcttatataaacccttataaattggacaatttctttagatttttt-attatttgtttgcaatttcttatgtaaa 27863715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 9231888 - 9231964
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  9231888 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 9231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 24694685 - 24694761
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  24694685 tgaatttcttatataaactcctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 24694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 24500767 - 24500853
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagacttta 262  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||  || |||||| ||||| ||||| |||| || ||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttgtaattttttttgcccagacttta 24500853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 13627634 - 13627558
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||||||||||||   |||||||||| ||||||| |||||||||||| | |||||||||||    
T  13627634 tgaatttcttatataaacccctataaattgagcaatttctttacatttttt-attatttgcttgtactttcttatgta 13627558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 1727967 - 1728035
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaattt 212  Q
    ||||||||||||||||| ||||||||||||   |||||||||| ||||||| ||||||| ||||||||||    
T  1727967 tgaatttcttatataaacccctataaattgagcaatttctttacatttttt-attatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 7517083 - 7517031
Alignment:
Q  170 ttggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||| ||||| |||||||||||| || ||||||||||||||||||| |||||    
T  7517083 ttggacaatttttttagatttttttatcatttgcttgcaatttcttaagtaaa 7517031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 24497598 - 24497638
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattgg 173  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  24497598 taaattcctctgaatttcttatataaacccctataaattgg 24497638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 11084661 - 11084628
Alignment:
Q  187 attttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| ||||||||||||||||||||||||||    
T  11084661 atttttttattatttgcttgcaatttcttatgta 11084628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 11856391 - 11856261
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 240  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||     
T  11856391 tctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaaactcctataaatatgttgc 11856292  T
Q  241 aatt-tatttttcctagactttataataatc 270  Q
    |||| | |||| || || |||||||||||||    
T  11856291 aattattttttgcccaggctttataataatc 11856261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 9738017 - 9738096
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9738017 tgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatttcttatgtaaa 9738096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 8456997 - 8457141
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||  |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||  |  |||||||||||| ||    
T  8456997 tgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T
Q  243 tttattttt-cctagactttataataatcttgtctccaccactga 286  Q
    ||| ||||| ||  | ||||| |||||||||| |||| |||||||    
T  8457097 tttttttttgcccgggctttacaataatcttggctccgccactga 8457141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 614416 - 614505
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||||||||| ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  614416 taaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaa 614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 10081239 - 10081131
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||| ||||| ||    
T  10081239 tgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttcttatgtaaactcctataaatgtgttgcaa 10081140  T
Q  243 tttattttt 251  Q
    ||| |||||    
T  10081139 ttttttttt 10081131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 42119726 - 42119637
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  42119726 taaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatttcttatgtaaa 42119637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 6174850 - 6174743
Alignment:
Q  133 taaattcttctgaatttcttatataaatccc--tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgata 230  Q
    ||||||||||||||||||||||||||| |||  ||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||  |  |||    
T  6174850 taaattcttctgaatttcttatataaacccccctataaattggacaatttctttatatttttt-attatttgcttgcaatttcctatgtaaacccccata 6174752  T
Q  231 aatatgttg 239  Q
    |||||||||    
T  6174751 aatatgttg 6174743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 39862511 - 39862594
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 217  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  39862511 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttagatttttt-attatttgcttgcaatttcttat 39862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 23218579 - 23218503
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23218579 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 25560363 - 25560440
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||   |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25560363 aatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttgcaatttcttatgtaaa 25560440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 37169067 - 37169143
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  37169067 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 37169143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 38397692 - 38397616
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  38397692 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 38397616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 33271304 - 33271431
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-ga 241  Q
    ||||||||||||||||| | |||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||| ||||  |  |||||||| |||  |    
T  33271304 tgaatttcttatataaacctctataaattggacaatttctttatatttttt-attatttgtttgtaatttcttatataaacccctataaatatattgcaa 33271402  T
Q  242 atttatttttcctagactttataataatc 270  Q
    |||| |||| |||||||||||||||||||    
T  33271403 atttgttttgcctagactttataataatc 33271431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 10115264 - 10115185
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaattt 212  Q
    ||||||| |||| |||||||||||||| ||| ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  10115264 taaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaattatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 27916244 - 27916105
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa-ttctgataa 231  Q
    ||||||| |||||||||||||||||||  |||||||||||   |||||| ||||||||||| |||||||| |||||||||||||| ||||  ||  ||||    
T  27916244 taaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaatttcttatataaacctcctataa 27916145  T
Q  232 atatgttggaatttattttt-cctagactttataataatc 270  Q
    || ||||| || |||||||| || | ||||||||||||||    
T  27916144 atgtgttgcaaattatttttgcccaaactttataataatc 27916105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 15631708 - 15631631
Alignment:
Q  143 tgaatttcttatataaatccc-tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  15631708 tgaatttcttatataaaccccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 15631631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 16618604 - 16618680
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||  ||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  16618604 tgaatttcttatataaactcctataaattggacaatttttttatatttttt-attatttgcttgcaatttcttatgta 16618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 36769098 - 36769186
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||||||||||||||||||| | |||| |||| |  |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  36769098 taaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga-tttttgattatttgcttgcaatttcatatgtaaa 36769186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 29491448 - 29491554
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||  |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||  |  |||||| ||||| ||    
T  29491448 tgaatttcttatataac-ccctataaattggacaatt-ctttaaattttttgattatttgcttgcaatttcttatgcaaacacatataaatgtgttgcaa 29491545  T
Q  243 tttattttt 251  Q
    ||| |||||    
T  29491546 ttttttttt 29491554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 6257444 - 6257517
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 217  Q
    ||||||||||||| ||| |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||    
T  6257444 tgaatttcttatacaaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttat 6257517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 29790243 - 29790329
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaa 221  Q
    ||||||||| ||||||||||||||||| |  ||||||||||  |||||||||||  |||||||||||||||||  ||||||||||||||    
T  29790243 taaattcttatgaatttcttatataaacctttataaattgggcaatttctttag--tttttgattatttgcttttaatttcttatgtaa 29790329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 10052599 - 10052710
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcct-agactttataataatcttgt 274  Q
    |||||||||| | ||||  ||||||||||||||||||||||||||||  |  |||||||||||| ||||| ||||| || | |||||||||||||  ||     
T  10052599 aatttctttaaaattttaaattatttgcttgcaatttcttatgtaaaagcctataaatatgttgcaatttttttttgctcaaactttataataattctgg 10052698  T
Q  275 ctccaccactga 286  Q
    ||||||||||||    
T  10052699 ctccaccactga 10052710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 3341162 - 3341232
Alignment:
Q  151 ttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||  |||||||||||||  ||||||||||| |||| ||||||||||||| |||||| |||||||||    
T  3341162 ttatataatcccctataaattgggaaatttctttagctttt-tgattatttgctttcaattttttatgtaaa 3341232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 10052532 - 10052606
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 215  Q
    |||||| | ||||||||||   ||||||||| | ||||||||||| | |||| ||||||||||||||||||||||    
T  10052532 tctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagattatttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 15475430 - 15475508
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    ||||| |||||||||||  ||||||||| | |||||||||| ||||||  ||||||| || | ||||||||||||||||    
T  15475430 aattttttatataaatctatataaattgaaaaatttctttaaatttttgtattattttctcgtaatttcttatgtaaat 15475508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 19322058 - 19322110
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgatt 197  Q
    |||||||||||||||  ||||||||||||  |||| |||||||||||||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagattttttgatt 19322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 22903329 - 22903226
Alignment:
Q  167 aaattggataatttctttagattttttgattattt--gcttgcaatttcttatgtaaa-ttctgataaatatgttggaatttatttttcctagactttat 263  Q
    |||||||  ||||||||||| |||||| ||| |||  |||||||||||||||||||||  ||| |||||| ||||| ||||| ||||||| || ||||||    
T  22903329 aaattgggcaatttctttagttttttttattctttttgcttgcaatttcttatgtaaacctct-ataaatgtgttgcaattt-tttttcccaggctttat 22903232  T
Q  264 aataat 269  Q
    ||||||    
T  22903231 aataat 22903226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 144 - 285
Target Start/End: Original strand, 322584 - 322726
Alignment:
Q  144 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaat 243  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  |   ||||| ||||| |||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaat 322683  T
Q  244 ttattttt-cctagactttataataatcttgtctccaccactg 285  Q
    || ||||| || ||||||| |||||||| || |||| ||||||    
T  322684 ttttttttgcccagactttgtaataatcctggctccgccactg 322726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 17888574 - 17888692
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| | ||||||||||||||||  |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||  |  |||||    
T  17888574 taaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaa 17888673  T
Q  233 tatgttggaatttattttt 251  Q
    | ||||| ||| |||||||    
T  17888674 tgtgttgcaatatattttt 17888692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 9742557 - 9742646
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| |||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||||    
T  9742557 taaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttcttatgtaaa 9742646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 35322725 - 35322817
Alignment:
Q  130 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||  ||||||| ||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  35322725 atataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttcttatataaa 35322817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 10094425 - 10094495
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatt 211  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  10094425 tctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaatt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 283
Target Start/End: Complemental strand, 46474098 - 46473948
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| | ||||||| ||||||||| || ||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||||| || |||||    
T  46474098 taaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatttgcttgtaatttcttatgtaaatccttataaa 46473999  T
Q  233 tatgttggaatttatttttcctagactttataataatcttgtctccaccac 283  Q
    | ||||| ||  | |||| || |||||||| ||||||| || |||| ||||    
T  46473998 tgtgttgcaaaattttttacccagactttacaataatcctggctccgccac 46473948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 20818661 - 20818582
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||||  ||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  20818661 tgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgcaatttcttatgtaaa 20818582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 16338237 - 16338318
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 215  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  16338237 taaattcctatgaattttttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 1535865 - 1535789
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  1535865 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 1535789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 12792263 - 12792344
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||||| |||||||||||||  |||| |||||||||||| ||||||||||||| |||||||||| ||||    
T  12792263 tctgaatttcttatataaacccctataaattgggcaattactttagatttttagattatttgcttgaaatttcttatataaa 12792344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 34241087 - 34241011
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34241087 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 50328900 - 50328759
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||| ||||||||||||||| | |||||||||||| |||||||||| ||||||| ||||||  |||||||||| |||||||||  || |||||    
T  50328900 taaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttattattcacttgcaattttttatgtaaacccttataaa 50328801  T
Q  233 tatgttg-gaatttatttttcctagactttataataatcttg 273  Q
    | |||||  ||| | |||| || | |||||||||||||||||    
T  50328800 tgtgttgcaaatattttttgcccaaactttataataatcttg 50328759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 52632612 - 52632536
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| | ||||||||||||||||||||||||    
T  52632612 tgaatttcttatataaatccctataaattgggcaatttctttacatttttt-aatatttgcttgcaatttcttatgta 52632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 25954854 - 25954768
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  25954854 taaattcctatgaatttcttatataaactcctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 25954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 31377484 - 31377405
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||  | |||||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||    
T  31377484 tgaatttcttatataaccctctataaattgggcaatttctttagattttttaactatttgcttgcaatttcttatgtaaa 31377405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 35019030 - 35018954
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| || |||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  35019030 tgaatttcttatataaacccttataaattaggtaatttctttacatttttt-attatttgcttgcaatttcttatgta 35018954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 36012219 - 36012295
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||||||||||||| |||||||    
T  36012219 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaattttttatgta 36012295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 37801298 - 37801374
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| |||||||||||||||||||||||  || ||||||| ||||||| ||||||||||||||||||||||||||    
T  37801298 tgaattttttatataaatccctataaattgggcaaattctttacatttttt-attatttgcttgcaatttcttatgta 37801374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 46583575 - 46583651
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  46583575 tgaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 46583651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 49284451 - 49284375
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||| |||||||||||||||||    
T  49284451 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgtttgcaatttcttatgta 49284375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 19124762 - 19124854
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattc 225  Q
    ||||||| |||||||||||||||||||   || |||||||   |||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  19124762 taaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttcttatgtaaattc 19124854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 47084108 - 47084056
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagatttttt 193  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  47084108 tctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 24992014 - 24991968
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  24992014 aatttctttagattttatgattatttgctggcaatttcttatgtaaa 24991968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 54090276 - 54090144
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaa-tttcttatgtaaattctgataaatatgttg 239  Q
    ||||||||| |||||||||  | ||||||||||  ||||| |||||||||||| ||||||||||||||| ||| |||||||||  || ||| || |||||    
T  54090276 tctgaatttattatataaactcttataaattgggcaatttttttagatttttt-attatttgcttgcaatttttttatgtaaaccct-atagatgtgttg 54090179  T
Q  240 gaatttattttt-cctagactttataataatcttg 273  Q
     ||||| ||||| || | |||||||||||||||||    
T  54090178 caatttttttttgcccatactttataataatcttg 54090144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 5780790 - 5780846
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattattt 201  Q
    |||||||||||||||||| ||||||||||  |||||||||| ||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttttattattt 5780846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 11054550 - 11054468
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttaga---ttttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||| | |||||||||||  ||| |||||||    ||||||  |||||||||||||||||||||||||||    
T  11054550 tgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaatttcttatgtaaa 11054468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 16338311 - 16338354
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  16338311 aatttctttacatttttt-attatttgcttgcaatttcttatgta 16338354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 33982096 - 33982017
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgatta--tttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||  | |||||||| ||||||||||||||||| | | | ||  |||||||||||||| |||||||||    
T  33982096 aatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgcaattttttatgtaaa 33982017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 33057691 - 33057833
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 242  Q
    ||||||||||||||||  |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||    
T  33057691 tgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttgcaatttcttatgtaaatcct-ataaatgtgttgcaa 33057789  T
Q  243 tttattttt-cctagactttataataatcttgtctccaccactg 285  Q
    ||| |||||  | |||||||| ||||||| || |||| ||||||    
T  33057790 tttttttttatccagactttacaataatcctgactcctccactg 33057833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 133 - 284
Target Start/End: Complemental strand, 10334282 - 10334130
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| |||||||||||||||||||  | ||||||||||  ||||||||||||| |||| | ||||||||||||||||||||||||||  |  |||||    
T  10334282 taaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttcttatgtaaacccctataaa 10334183  T
Q  233 tatgttggaatttatttttcct-agactttataataatcttgtctccaccact 284  Q
    | ||||| |||||  |||| || |||||||||||||||| || |||| |||||    
T  10334182 tgtgttgcaattttcttttgctcagactttataataatcctgactccgccact 10334130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 29555963 - 29556049
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29555963 taaattcctatgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29556049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 32876564 - 32876640
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  32876564 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 32876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 19334594 - 19334674
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  19334594 tgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatataaa 19334674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 10576767 - 10576691
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10576767 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 10576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 34259612 - 34259536
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34259612 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 34707210 - 34707134
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34707210 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34707134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 44164777 - 44164853
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44164777 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44164853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 24320474 - 24320549
Alignment:
Q  144 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  24320474 gaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 24320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 17303138 - 17303228
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| | ||||||||||||||||| || | ||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17303138 taaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttattatttgcttgcaatttcttatgtaaa 17303228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 29238177 - 29238253
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||||| |||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||    
T  29238177 tgaatttcttatataaacccctaaaaattggaaaatttctttacatttttt-attatttgcttacaatttcttatgta 29238253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 29981147 - 29981223
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||   |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29981147 tgaatttcttatataaacttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 29981223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 9770754 - 9770682
Alignment:
Q  142 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 215  Q
    |||||||||||||||||| | |||| ||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  9770754 ctgaatttcttatataaaccactatgaattggacaatttctttaga-cttttgattatttgcttgcaatttctt 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 41853226 - 41853081
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagatt-ttttgattatttgcttgcaatttcttatgtaaa-ttctgataaatatgttggaa 242  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||  ||| ||||  ||| |||||| ||||| ||    
T  41853226 aatttcttatttaaattcctataagttggacaatttttttagatttttttgattatttgcttgcaattttctatataaacctct-ataaatgtgttgcaa 41853128  T
Q  243 tttatttttc---ctagactttataataatcttgtctccaccactga 286  Q
    ||| ||||||   | |||||||||||||||| || |||| |||||||    
T  41853127 tttttttttctggccagactttataataatcctggctccgccactga 41853081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 26284433 - 26284556
Alignment:
Q  164 tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt---cctagactt 260  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||  |  |||||| ||||| ||||| |||||   || | ||||    
T  26284433 tataaattggacaatttctttagatttttt-attattttcttgcaatttcttttgtaaacccctataaatgtgttgcaatttttttttttgcccaaactt 26284531  T
Q  261 tataataatcttgtctccaccactg 285  Q
    ||||| |||| || |||||||||||    
T  26284532 tataacaatcctggctccaccactg 26284556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 2702287 - 2702395
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactttataataatcttgtc 275  Q
    ||||| |||||||||||| ||||||| | ||||||||||||||||||  |  | |||||||||| || || ||||||| |  ||||||||||||| || |    
T  2702287 aatttttttagatttttttattattttcatgcaatttcttatgtaaacccataaaaatatgttgcaaattttttttcccaagctttataataatcctgac 2702386  T
Q  276 tccaccact 284  Q
    |||||||||    
T  2702387 tccaccact 2702395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 15017877 - 15017817
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagatttttt 193  Q
    ||||||| |||||||||||||||||||  | ||||||||||| ||||||||||||||||||    
T  15017877 taaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 23032186 - 23032239
Alignment:
Q  170 ttggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  23032186 ttggacaatttctttagattttttgattatttgcttgtaattttttatctaaat 23032239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 25128163 - 25128251
Alignment:
Q  197 tatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactttataataatcttgtctccaccactg 285  Q
    ||||||| ||||||||||||||||||  |  |||||||||||| || || ||||  | | |||||||||||||| || |||||||||||    
T  25128163 tatttgcatgcaatttcttatgtaaacccatataaatatgttgcaaatttttttgtccaaactttataataatcctggctccaccactg 25128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 34484 - 34612
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 240  Q
    ||||||||  ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||  |||||  |||||     
T  34484 tctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttcttatgtaaactcctataaacgtgttgt 34583  T
Q  241 aatttatttttcctagactttataataat 269  Q
    ||||| |||| || ||| |||||||||||    
T  34584 aattttttttgcccagattttataataat 34612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 34697431 - 34697550
Alignment:
Q  151 ttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaat-ttattt 249  Q
    ||||||||||| ||||||||||   ||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  34697431 ttatataaatctctataaattgagaaatttctttaattttttttattatttgcttgcaatttcttatgtaaattcttataaatatgttgcaatattattt 34697530  T
Q  250 ttcctagactttataataat 269  Q
    | || | |||||||||||||    
T  34697531 tgcccaaactttataataat 34697550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 43282875 - 43282965
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||  |||| ||||||||||||| |||||||||||||||    
T  43282875 taaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgctatttcttatgtaaat 43282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 26021490 - 26021413
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  26021490 tgaatttcttatataaacccctataaattgggtaatttctttacatttttttattatttgcttgcaatttcttatgta 26021413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 19334890 - 19334751
Alignment:
Q  130 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgat 229  Q
    |||||||||||| ||||||| ||||||||| | ||||||||| || |||||||||| ||| ||| ||||||||||| |||||||||||||||   || ||    
T  19334890 atataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaatttcttatgtaacccct-at 19334792  T
Q  230 aaatatgttggaatttatttttcctagactttataataatc 270  Q
    |||||||||| || || ||||| | ||||||||||||||||    
T  19334791 aaatatgttgcaaatttttttttccagactttataataatc 19334751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 42072522 - 42072444
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  42072522 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgtaaa 42072444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 21525452 - 21525376
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21525452 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 21525376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 10112151 - 10112013
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||| |||||||||||||||  | ||||||||||| |||||||||  |||||||||||||||  |||||||||||||||||||  |  |||||    
T  10112151 taaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgcaatttcttatgtaaacccctataaa 10112052  T
Q  233 tatgttggaa-tttatttttcctagactttataataatc 270  Q
    ||||||| || |||||| | | ||| |||||||||||||    
T  10112051 tatgttgcaattttattatgcgtaggctttataataatc 10112013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 21488170 - 21488081
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 223  Q
    ||||||| | ||||||||||||| ||| ||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  21488170 taaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttttatta-ttgcttgcaatttcttatgtaaat 21488081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 22324690 - 22324614
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  22324690 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 22324614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 35806888 - 35806812
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  35806888 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 35806812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 24065367 - 24065289
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||||  ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  24065367 tgaatttcttatataaactcctataaattgggcaatttctttagctttttt-attatttgcttgcaatttcttatgtaaa 24065289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 33934393 - 33934479
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  33934393 taaattcctatgaatttcttatataaacccctataaattgggcaatttttttatatttttt-attatttgcttgcaatttcttatgta 33934479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 42013966 - 42013890
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42013966 tgaatttcttatataaactcctataaattgggcaatttctttatatttttt-attatttgcttgcaatttcttatgta 42013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 2271290 - 2271239
Alignment:
Q  142 ctgaatttcttatataaatccctataaattggataatttctttagatttttt 193  Q
    |||||||||||||||||| ||||||| ||| | |||||||||||||||||||    
T  2271290 ctgaatttcttatataaacccctatatattaggtaatttctttagatttttt 2271239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 16819007 - 16819137
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttcttta--gattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 240  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||   | | ||| |||||||||||||||||| |||| ||||  |  |||||| |||||     
T  16819007 tgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttgcaattttttatataaacccctataaatgtgttga 16819106  T
Q  241 aatttattttt-cctagactttataataatc 270  Q
    | ||| ||||| || || |||||||||||||    
T  16819107 attttttttttgccaaggctttataataatc 16819137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 16523200 - 16523155
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagat 188  Q
    |||||||||||||||||||||||||||||||  || ||||||||||    
T  16523200 tgaatttcttatataaatccctataaattgggcaacttctttagat 16523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 23756599 - 23756566
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaa 209  Q
    |||||||||| |||||||||||||||||||||||    
T  23756599 aatttctttaaattttttgattatttgcttgcaa 23756566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 23685406 - 23685521
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 244  Q
    |||||||||||||||||| |||||||| || ||||| |||| || |||||||||||||||||||||||||||||||||  || |||||||||||| ||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaatt 23685505  T
Q  245 tatttttcctagactt 260  Q
    | |||| || ||||||    
T  23685506 ttttttaccaagactt 23685521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 1387322 - 1387400
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1387322 tgaatttcttagataaacccctataaattgggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaa 1387400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 40780160 - 40780018
Alignment:
Q  133 taaattcttctgaatttcttatataaat-ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataa 231  Q
    ||||||| |||||||||||||||||||  ||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||||||     ||||    
T  40780160 taaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaatttcttatgtaaaccgctataa 40780061  T
Q  232 atatgttggaa-tttatttttcctagactttataataatcttg 273  Q
    |||||||| || ||| ||||||| | || ||||||||||||||    
T  40780060 atatgttgcaattttttttttcccaaaccttataataatcttg 40780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 29846536 - 29846460
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29846536 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 41674738 - 41674883
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg 239  Q
    ||||||||| ||||||||| || ||||||||||| |||||||||||| |||||| | ||||||||||||||||||||| ||||| |  |||||| |||||    
T  41674738 tctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatataaatccctataaatgtgttg 41674837  T
Q  240 gaatttatttttcctagactttataataatcttgtctccaccactg 285  Q
     || || ||||||  ||||||||| |||||| || |||| ||||||    
T  41674838 caaattttttttctcagactttatgataatcctggctccgccactg 41674883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 19181652 - 19181566
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  19181652 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 19181566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 40277324 - 40277398
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40277324 aatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 14539736 - 14539817
Alignment:
Q  141 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||||||||||||||| |||||||||| |  |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  14539736 tctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaatttcttatataaa 14539817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 14942078 - 14942154
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14942078 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14942154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 133 - 285
Target Start/End: Original strand, 28321727 - 28321880
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    |||||||| |||||| ||||||||||| || ||||||||||  |||||| ||  ||||||||||||||||||| ||||||||||| ||||  |  |||||    
T  28321727 taaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttcttatataaacccctataaa 28321826  T
Q  233 tatgttggaatttat-ttttcctagactttataataatcttgtctccaccactg 285  Q
    | ||||| ||||| | ||| || |||||||||||||||| || |||| ||||||    
T  28321827 tgtgttgcaatttttatttgcccagactttataataatcctggctccgccactg 28321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 33009780 - 33009687
Alignment:
Q  130 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttt-tgattatttgcttgcaatttcttatgtaaa 222  Q
    |||||||| | | ||||||| |||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||||||    
T  33009780 atataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaattttttatgtaaa 33009687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 42769792 - 42769868
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42769792 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42769868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 6318492 - 6318563
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttc 213  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  6318492 tgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaatttc 6318563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 32486320 - 32486198
Alignment:
Q  161 ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactt 260  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||| ||||  || |||||| ||||| ||||| |||| || | ||||    
T  32486320 ccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaattttttttacccaaactt 32486221  T
Q  261 tataataatcttgtctccaccac 283  Q
    | |||||||| || |||| ||||    
T  32486220 tgtaataatcatggctccgccac 32486198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 14186472 - 14186548
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    ||||||||||||||||| |||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||||    
T  14186472 tgaatttcttatataaacccctataaattgggcaatttctttacacttttt-attatttgcttgcaatttcttatgta 14186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 43139839 - 43139761
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagatt-ttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||||||||||| ||||||||||||   |||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  43139839 aatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaatttcttatataaa 43139761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 3597903 - 3597973
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctta 216  Q
    |||||||| | ||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacatttttt-attatttacttgcaatttctta 3597973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 3956666 - 3956587
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 222  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||| | ||||| |||||||||||||||||||  |||||||    
T  3956666 tgaatttattatataaacccctgtaaattggacaatttctttaaaattttttattatttgcttgcaatttcaaatgtaaa 3956587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 217  Q
    |||||||||||||||    |||||||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 2888135 - 2888039
Alignment:
Q  143 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg 239  Q
    ||||||| |||||||||  ||||||||||| | ||||| |||||||||||| |||| ||||| ||||  |||||||||||  |  ||||||||||||    
T  2888135 tgaattttttatataaactcctataaattgaacaatttttttagatttttttattaattgctagcaaagtcttatgtaaacccctataaatatgttg 2888039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 54623 - 54542
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 215  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  54623 taaattcctatgaattttttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 54549 - 54506
Alignment:
Q  176 aatttctttagattttttgattatttgcttgcaatttcttatgta 220  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  54549 aatttctttacatttttt-attatttgcttgcaatttcttatgta 54506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 20855 - 20953
Alignment:
Q  133 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 232  Q
    ||||||| ||||||||||||||||||| | |||||||||||| ||||| |||||||||        |||||||||||||||||||||||||||  |||||    
T  20855 taaattcctctgaatttcttatataaagctctataaattggacaatttttttagattt--------tttgcttgcaatttcttatgtaaattcgtataaa 20946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 85550 - 85479
Alignment:
Q  198 atttgcttgcaatttcttatgtaaa-ttctgataaatatgttggaatttatttttcctagactttataataat 269  Q
    |||||||||||||||||||||||||  ||| |||||||||||| || || |||  ||||||||||||||||||    
T  85550 atttgcttgcaatttcttatgtaaacctct-ataaatatgttgcaaattttttaacctagactttataataat 85479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 85592 - 85552
Alignment:
Q  145 aatttcttatataaatccctataaattggataatttcttta 185  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttcttta 85552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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