View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18876_low_3 (Length: 408)
Name: NF18876_low_3
Description: NF18876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18876_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 22 - 361
Target Start/End: Complemental strand, 37084684 - 37084345
Alignment:
| Q |
22 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttct |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37084684 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccattaacttct |
37084585 |
T |
|
| Q |
122 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084584 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
37084485 |
T |
|
| Q |
222 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084484 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttg |
37084385 |
T |
|
| Q |
322 |
atggttagaattcaattctgttgatgtagaaggatgttga |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084384 |
atggttagaattcaattctgttgatgtagaaggatgttga |
37084345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 22 - 361
Target Start/End: Original strand, 37184596 - 37184948
Alignment:
| Q |
22 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttct |
121 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37184596 |
gtgctgaatgatcggttgaatgatccagtaatgcaggattgttttgaatcattatttcccaaagatagcacaaaaaacacacggttttccattaacttct |
37184695 |
T |
|
| Q |
122 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| | |||| | |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37184696 |
tcacgtcgattggacttggcgagcttactaagaatctaggcgtctatttgaaaaatctgaccttgcggagctcccattcattggatgaaagtggcagaaa |
37184795 |
T |
|
| Q |
222 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttc--------------acaatatgtttaagttggttgactttcctt |
307 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||| |
|
|
| T |
37184796 |
acgtagaagaaaataaagcaaatgcattttaaggcccttgcaaaccttttgatttagaatcaatggttttacaatatgtt-aagttagtttactttcctt |
37184894 |
T |
|
| Q |
308 |
tttaattacggttgatggttagaattcaattctgttgatgtagaaggatgttga |
361 |
Q |
| |
|
||| || || |||||| ||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37184895 |
tttcataactgttgatagttagaattggattctgctgatgtagagggatgttga |
37184948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University