View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18876_low_6 (Length: 251)
Name: NF18876_low_6
Description: NF18876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18876_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 6933737 - 6933940
Alignment:
| Q |
19 |
atctacaacctcgaatattcagt-tactgcagaataagaaatacattagaaaggatacgtattgttggttcatcatgtatatgtctcaaaacaaaaatga |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6933737 |
atctacaacctcgaatattcagggtactgcagaataagaaatacattagaaaggatacgtattgttggttcatcatgtatatatctcaaaacaaaaatga |
6933836 |
T |
|
| Q |
118 |
agtgaataaataatgtaatctttgcacaattaccagaacagtgttaatttggttttaaggtattcggcaatctatatagagtatattctaagtacacaaa |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6933837 |
agt-------------aatctttgcacaattaccagaacagtgttaatttggttttaaggtattcggcaatctatatagagtatattccaagtacacaaa |
6933923 |
T |
|
| Q |
218 |
tcaaattatgataagta |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6933924 |
tcaaattatgataagta |
6933940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University