View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_11 (Length: 348)
Name: NF18878_high_11
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 6881583 - 6881901
Alignment:
| Q |
18 |
accatagtctatatg-ctatcattgatttggatactgaatacatattaagatttgttgtcaaatttagccaatacatttaagccaaccacataatttctt |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881583 |
accatagtctatatgtctatcattgatttggatactgaatacatattaagatttgttgtcaaatttagccaatacatttaagccaaccacataatttctt |
6881682 |
T |
|
| Q |
117 |
ctcaaactcaatctaattataagatcatgacttacattaatgcattgcctagcacaatggcaaggctataagaaatgtatcttgcattttctggagaaat |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881683 |
ctcaaactcaatctaattataagatcatggcttacattaatgcattgcctagcacaatggcaaggctataagaaatgtatcttgcattttctggagaaat |
6881782 |
T |
|
| Q |
217 |
cctatcttgcattaaaatgagccagttatccaaagcttgcacattatctttcatgcattgtagtgctttgcttaataagtaatcttttttggtcgaaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881783 |
cctatcttgcattaaaatgagccagttatccaaagcttgcacattatctttcatgcattgtagtgctttgcttaataagtaatcttttttggtcgaaaga |
6881882 |
T |
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| Q |
317 |
cttaataagtaatctatat |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
6881883 |
cttaataagtaatctatat |
6881901 |
T |
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