View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18878_high_12 (Length: 348)

Name: NF18878_high_12
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18878_high_12
NF18878_high_12
[»] chr6 (3 HSPs)
chr6 (1-301)||(1223444-1223744)
chr6 (299-333)||(898092-898126)
chr6 (233-276)||(26207961-26208004)
[»] chr7 (7 HSPs)
chr7 (1-301)||(24472864-24473164)
chr7 (134-291)||(8020360-8020517)
chr7 (134-291)||(29214344-29214501)
chr7 (200-301)||(31047546-31047647)
chr7 (134-291)||(25712892-25713049)
chr7 (206-288)||(38111362-38111444)
chr7 (228-276)||(45753388-45753436)
[»] chr3 (5 HSPs)
chr3 (1-301)||(54812731-54813031)
chr3 (1-301)||(46427972-46428272)
chr3 (1-301)||(42793902-42794202)
chr3 (26-291)||(27156674-27156939)
chr3 (134-291)||(54346161-54346318)
[»] chr8 (2 HSPs)
chr8 (5-301)||(44145135-44145431)
chr8 (134-291)||(26617340-26617497)
[»] chr5 (2 HSPs)
chr5 (1-301)||(18882796-18883096)
chr5 (206-288)||(14024272-14024354)
[»] chr1 (6 HSPs)
chr1 (5-201)||(22065689-22065885)
chr1 (134-291)||(5308068-5308225)
chr1 (134-291)||(23949124-23949281)
chr1 (134-291)||(23085527-23085684)
chr1 (134-291)||(23722713-23722870)
chr1 (134-254)||(50953184-50953304)
[»] chr2 (4 HSPs)
chr2 (25-291)||(40196893-40197159)
chr2 (134-291)||(7305697-7305854)
chr2 (32-253)||(26381785-26382006)
chr2 (208-294)||(42161748-42161834)
[»] chr4 (4 HSPs)
chr4 (134-291)||(36895032-36895189)
chr4 (134-291)||(34390421-34390578)
chr4 (1-46)||(47598073-47598118)
chr4 (206-288)||(1368771-1368853)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 1223444 - 1223744
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223444 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 1223543  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223544 ctagatgtgcttgtcccaaccatttttctcttaaggtcattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 1223643  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  1223644 tatgaagccatacatgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcatttccacaacatgggcaagtaggagaaatcccaac 1223743  T
Q  301 a 301  Q
    |    
T  1223744 a 1223744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 898092 - 898126
Alignment:
Q  299 acaactgattctttttactttgatgtcaaagttga 333  Q
    |||||||||||||||||||||||||||||||||||    
T  898092 acaactgattctttttactttgatgtcaaagttga 898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 26208004 - 26207961
Alignment:
Q  233 tcacgaagcacatgaaggacagtttcatcctcattcccacaaca 276  Q
    ||||||||||||||||||||||| |||||  |||||||||||||    
T  26208004 tcacgaagcacatgaaggacagtctcatctgcattcccacaaca 26207961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 24473164 - 24472864
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24473164 tatatttggattattcggcctttggaaatccgcttcaaatatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtatgccat 24473065  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473064 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 24472965  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  24472964 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacgtgaaggacagtttcatcatcattcccacaacatgggcaagtaggagaaatccaaac 24472865  T
Q  301 a 301  Q
    |    
T  24472864 a 24472864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 8020360 - 8020517
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||  || |||||||| ||||||||||| ||  | ||||| || | |||||||||||| || || || |||||||    
T  8020360 aggttattgaagaaccaatccctgcaattgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgggtagcgtggatgcaat 8020459  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||||||||||| ||||| |||||| | |||||| |||||||    
T  8020460 cgcgaagcacatgaagaacagtttcatcttcatttccacaatacgggcaattaggaga 8020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 29214344 - 29214501
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | |||||||||||  |||  || |||||  | ||||||||||| |  ||||||||  | | || |||||||||||| || || |||||||    
T  29214344 aggttattgaagaaccaatccctgtaattgaaagaaaaacaattagttataaaattagaaggaacggtgtaaatccatacctgagtagcgtggatgcaat 29214443  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||    
T  29214444 cacgaagcacatgaagaacagtttcatcttcatttccacaacacaggcaagtaggaga 29214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 31047647 - 31047546
Alignment:
Q  200 atatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaa 299  Q
    ||||||||  ||||| ||||| |||||||||||| | | ||||||||||| ||| ||||||| ||||| ||||||||| |  |||| || ||||||||||    
T  31047647 atatgaagttatacccgagttacatgaatgcaattatggagcacatgaagaacaatttcatcatcattaccacaacattgataagtgggtgaaatcccaa 31047548  T
Q  300 ca 301  Q
    ||    
T  31047547 ca 31047546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 25713049 - 25712892
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| |||||  | ||||| || | | ||||||| ||  ||||||| || | |||||||| ||||||||  || ||| |||    
T  25713049 aggttattgaagaaccaatccctgcaatcggaagaaaataaataatttataaaatcataaggaacgatgtaaagccatatctgagttgtgtggatggaat 25712950  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    |||||| ||||| ||| || |||||||| ||||| | |||||  ||| ||||||||||    
T  25712949 cacgaatcacattaagaacggtttcatcttcatttcgacaactcgggaaagtaggaga 25712892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 38111362 - 38111444
Alignment:
Q  206 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 288  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  38111362 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 38111444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 45753388 - 45753436
Alignment:
Q  228 tgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaaca 276  Q
    |||||||||||||||||||||| |||||||| ||  |||| ||||||||    
T  45753388 tgcaatcacgaagcacatgaagaacagtttcgtcggcatttccacaaca 45753436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 54812731 - 54813031
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54812731 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaatatcaacacgtagtcataaaggtggtctgccat 54812830  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  54812831 ctacatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataacgttggaaggaacaa 54812930  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54812931 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcattcccacaacatgggcaagtaggagaaatcccaac 54813030  T
Q  301 a 301  Q
    |    
T  54813031 a 54813031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 46428272 - 46427972
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46428272 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggtctgccat 46428173  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46428172 ctagatgtgtttgtcccaaccatttttctcttaaggttattggaaaaccaatccccacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 46428073  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  46428072 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttaatcatcattcccacaacatgggcaagtcggagaaatcccaac 46427973  T
Q  301 a 301  Q
    |    
T  46427972 a 46427972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 42794202 - 42793902
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794202 tatatttggattattcggcctttggaaatccgcttcaaatatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 42794103  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794102 ctagatgtgcttatcccaaccatttttctcttaaggttattggagaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 42794003  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||    
T  42794002 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcattcccacaacatgggcaagcaagggaaatcccaac 42793903  T
Q  301 a 301  Q
    |    
T  42793902 a 42793902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 27156674 - 27156939
Alignment:
Q  26 aaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtcccaaccattt 125  Q
    ||||| |||||||| ||||| || |||||||| |||||||| |||||||| || ||||| || ||  ||| ||| ||  | ||| | |||||||  || |    
T  27156674 aaatcagcttcaaaaatagttttattcctccacttccacaagtaccaacatgtcgtcatgaaagttatcttccaacttaaagtgttcgtcccaat-atct 27156772  T
Q  126 ttctc-ttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcat 224  Q
    ||||  || ||||||||| | ||||||||||| |||||||| |||||||| ||||||||||| ||  | ||||| || | |||||||||||| || || |    
T  27156773 ttcttgttgaggttattgaagaaccaatccctgcaatcaaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgggtagcgt 27156872  T
Q  225 gaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
      |||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  27156873 agatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaagtaggaga 27156939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 54346318 - 54346161
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||  || |||||||| ||||||||||| ||  | ||||| || | |||||||||||| || || || |||||||    
T  54346318 aggttattgaagaaccaatccctgcaattgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgggtagcgtggatgcaat 54346219  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||    
T  54346218 cgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggaga 54346161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 301
Target Start/End: Complemental strand, 44145431 - 44145135
Alignment:
Q  5 tttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||     
T  44145431 tttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataacaacacgtagtcataaaggtggtatgccatctaa 44145332  T
Q  105 atgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatg 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145331 atgtgcttgtcccaaccatatttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatg 44145232  T
Q  205 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaaca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  44145231 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacaatttcatcatcattcccacaacatgggcaagttggagaaatcccaaca 44145135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 26617340 - 26617497
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||| | ||||| || |||||||| ||||||||||| ||  | ||||| || | ||||||||||||||| ||||  ||||||     
T  26617340 aggttattgaagaaccaatccatgcaatcgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgagtagcatagatgcaac 26617439  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||    
T  26617440 cgcgaagcacatgaagaatagtttcatcttcatttccacaacacgggcaagtaggaga 26617497  T

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Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 18883096 - 18882796
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccat 100  Q
    ||||||||||||||| |||||||||||||| | || ||||||||| |||||| ||||||||||||||||| |  || ||||||| ||||||||||| |||    
T  18883096 tatatttggattatttggcctttggaaatcaggtttaaagatagttttgttcttccatttccacaaatactagtacatagtcatgaaggtggtctgtcat 18882997  T
Q  101 ctagatgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaa 200  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || || |||||||    
T  18882996 ctagatgtgctcgtcccaaccattttcctcttaaggttattgaaaaaccaatccctacagtcaaaggaaaagaagttagttataaaatcagagggaacaa 18882897  T
Q  201 tatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaac 300  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||    
T  18882896 tatgaagccatacctgagttgcatgaatacagtcacaaagcacatgaaggacattttcatcattattcccacaacatgggcaagtaggaaaaatcccaac 18882797  T
Q  301 a 301  Q
    |    
T  18882796 a 18882796  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 14024354 - 14024272
Alignment:
Q  206 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 288  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  14024354 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 14024272  T

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Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 22065689 - 22065885
Alignment:
Q  5 tttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  22065689 tttggattattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggtatgtcatctag 22065788  T
Q  105 atgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  22065789 atgtgcttgtcccaaccatttttctcttaaggttattggaaaaccaatccctgcaatcaaaggaaaagaagttagttataaagtcgaaaggaacaat 22065885  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 5308225 - 5308068
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||  || |||||||| ||||||||||| ||  | ||||| || | |||||||||||| || || || |||||||    
T  5308225 aggttattgaagaaccaatccctgcaattgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgggtagcgtggatgcaat 5308126  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||    
T  5308125 cgcgaagcacatgaagaacattttcatcttcatttccacaacacgggcaagtaggaga 5308068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 23949281 - 23949124
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||  || |||||||| ||||||||||| ||  | ||||| || | |||||||||||| || || || |||||||    
T  23949281 aggttattgaagaaccaatccctgcaattgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgggtagcgtggatgcaat 23949182  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||    
T  23949181 cgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggaga 23949124  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 23085527 - 23085684
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||| | ||||| || |||||||| ||||||||||| ||  | |||||||| | ||||||||||||||| || |  |||||||    
T  23085527 aggttattgaagaaccaatccttgcaatcgaaagaaaagaaattagttataaaatcatatggaacaatgtaaagccatacctgagtagcgtagatgcaat 23085626  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||| ||||||| ||||| ||| |||| | ||||||||||||    
T  23085627 cgcgaagcacatgaagaacaatttcatcttcatttccataacacgtgcaagtaggaga 23085684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 23722870 - 23722713
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||| || |||||||| ||||||||||| ||  | ||||| || | ||||||||| || || || || |||||||    
T  23722870 aggttattgaagaaccaatccctgcaatcgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacttgggtagcgtggatgcaat 23722771  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||||||    
T  23722770 cgcgaagcacatgaagaacaatttcatcttcatttccacaacacggacaagtaggaga 23722713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 50953184 - 50953304
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||| || |||||||| ||||||||||| ||  | ||||| || | ||||||||| || |  |||| ||||||||    
T  50953184 aggttattgaagaaccaatccctgcaatcgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacatgggcagcataaatgcaat 50953283  T
Q  234 cacgaagcacatgaaggacag 254  Q
    ||| |||||||||||| ||||    
T  50953284 cacaaagcacatgaagaacag 50953304  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 291
Target Start/End: Original strand, 40196893 - 40197159
Alignment:
Q  25 gaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtcccaaccatt 124  Q
    |||||| |||||||| ||||| || |||||||| |||||||| ||||||||| | ||||| || || |||| ||| ||  | ||| | ||||||||   |    
T  40196893 gaaatcagcttcaaaaatagttttattcctccacttccacaagtaccaacacatcgtcatgaaagttgtcttccaacttaaagtgttcgtcccaacgtct 40196992  T
Q  125 tttctcttaaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcat 224  Q
    ||  | || ||||||||| | ||||||||||| |||||||| |||||||| ||||||||||| || |||| ||  || | |||||||||| |||||||||    
T  40196993 ttcttgttgaggttattgaagaaccaatccctgcaatcaaaagaaaagaaattagttataaaatcagaagaaaggatgtaaagccatacccgagttgcat 40197092  T
Q  225 gaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||| ||||||| |||| ||| ||||||| ||||| |||||||| ||||||||||||||    
T  40197093 ggatgcaatcacaaagcacacgaagaacaatttcatcttcatttccacaacacgggcaagtaggaga 40197159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 7305697 - 7305854
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||| || |||||||| ||||||||||| ||  | ||||| || | ||||||||||||||| || |  |||||||    
T  7305697 aggttattgaagaaccaatccctgcaatcgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacctgagtagcgtagatgcaat 7305796  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  7305797 cgcgaagcacgtgaagaacagtttcatcttcatttccacaacacgggcaagtaggaga 7305854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 26381785 - 26382006
Alignment:
Q  32 gcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtcccaaccatttttctct 131  Q
    |||||||||||||| ||||| || || ||||| | || ||| || || | ||| |||||||| |||||  | ||  |||| || ||||||  |||||| |    
T  26381785 gcttcaaagatagttttgttgcttcacttccatagatgccagcaagttgccatgaaggtggtatgccaattggagctgctcgttccaaccccttttctat 26381884  T
Q  132 taaggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgca 231  Q
    | ||||||||| |||  |||||||| |||||||| ||||| || ||| ||||||| || |||||||||||||||| |||||| || ||||| ||||||||    
T  26381885 tgaggttattgaaaattcaatccctgcaatcaaaagaaaataaattatttataaaatcagaaggaacaatatgaaaccatacttgggttgcgtgaatgca 26381984  T
Q  232 atcacgaagcacatgaaggaca 253  Q
     ||| ||| ||| |||| ||||    
T  26381985 gtcatgaatcacgtgaatgaca 26382006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 42161748 - 42161834
Alignment:
Q  208 ccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaat 294  Q
    ||||||||||| ||||||  |||||||||||||||||||||  || || ||||   ||||||||||||| || |||||||| |||||    
T  42161748 ccatacctgagatgcatgcctgcaatcacgaagcacatgaataacggtctcatttgcattcccacaacaaggacaagtaggcgaaat 42161834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 36895032 - 36895189
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||||| ||||| || |||||||| ||||||| ||| ||  | ||||| || | ||||||||||||||| || |  |||||||    
T  36895032 aggttattgaagaaccaatccctgcaatcgaaagaaaagaaattagttacaaaatcatatggaacgatgtaaagccatacctgagtagcgtagatgcaat 36895131  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||  ||| ||||||| ||||| |||||||| ||||||||||||||    
T  36895132 cgcgaagcacatgaaaaacaatttcatcttcatttccacaacacgggcaagtaggaga 36895189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 34390421 - 34390578
Alignment:
Q  134 aggttattggaaaaccaatccctacaatcaaaggaaaagaagttagttataaagtcggaaggaacaatatgaagccatacctgagttgcatgaatgcaat 233  Q
    ||||||||| | ||||||||| | ||||| || |||||||| ||||||||||| ||  | ||||| || | ||||||||| || || || |  |||||||    
T  34390421 aggttattgaagaaccaatccttgcaatcgaaagaaaagaaattagttataaaatcatatggaacgatgtaaagccatacatgggtagcgtagatgcaat 34390520  T
Q  234 cacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 291  Q
    | |||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||    
T  34390521 cgcgaagcacatgaagaacagtttcatcttcatttccacaacacaggcaagtaggaga 34390578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47598073 - 47598118
Alignment:
Q  1 tatatttggattattcggcctttggaaatccgcttcaaagatagtc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47598073 tatatttggattattcggcctttggaaatccgcttcaaagatagtc 47598118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 1368853 - 1368771
Alignment:
Q  206 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 288  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  1368853 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 1368771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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