View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_13 (Length: 335)
Name: NF18878_high_13
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 9842472 - 9842780
Alignment:
| Q |
19 |
atcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttgctgtaattttttataatacttttgaagtcaaatccgattacnnnnnnnn- |
117 |
Q |
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| T |
9842472 |
atcatgtgcaaagattgatgaaagattgttgtaattccaagagtcattttctgcaattttttacaatacttttgaagtcaaatacgattactttttttct |
9842571 |
T |
|
| Q |
118 |
-cttcttcttgcgattagaaaccgactatagtataaaaaagaacagcatgtttttattctttatctttgttaaaaaattttgttcctataaacatttgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
9842572 |
tcttcttcttgcgattagaaaccgactatagtataaaaaagaacagtatgtttttattctttatctttgttaaaaattcttgttcctataaacatttgtt |
9842671 |
T |
|
| Q |
217 |
gaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttctaatattggtgaaagttgaacttttatgtatcaagccataactctaatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
9842672 |
gaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttctaatattggtgaaagttgtacttgtatgtatcaagccataactctaatat |
9842771 |
T |
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| Q |
317 |
attattctt |
325 |
Q |
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||||||||| |
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| T |
9842772 |
attattctt |
9842780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 9853419 - 9853541
Alignment:
| Q |
18 |
catcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttgctgtaattttttataatacttttgaagtcaaatccgattacnnnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9853419 |
catcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcattttctgtaattttttataatacttttgaagtcaaatccgattactttttttt |
9853518 |
T |
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| Q |
118 |
cttcttcttgcgattagaaaccg |
140 |
Q |
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| T |
9853519 |
cttcttcttgcgattagaaaccg |
9853541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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