View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_20 (Length: 236)
Name: NF18878_high_20
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42636045 - 42635825
Alignment:
| Q |
1 |
ttcaatttttcccctatgttacttatagcttattaccagatcttaataaagtgagttaacactaaactatgacttagctgaagtgaacatatttgatatt |
100 |
Q |
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| T |
42636045 |
ttcaatttttcccctatgttacttatagcttattaccagatcttaataaagtgagttaacactaaactatgacttagttgaagtgaacatatttgatatt |
42635946 |
T |
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| Q |
101 |
tcattcgatggtgttataggatacaaagcacttgcacagaaacaggagaccgcatataataataatttaagaaaaataaaagtgattttatacaatacgt |
200 |
Q |
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| T |
42635945 |
tcattcgatggtgttataggatacaaagcacttgcacagaaacaagagaccgcacataataataatttaagaaaaataaaagtgattttatacaatatgt |
42635846 |
T |
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| Q |
201 |
gtcagtgttggatcctgactt |
221 |
Q |
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||||||||||||| ||||||| |
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| T |
42635845 |
gtcagtgttggatactgactt |
42635825 |
T |
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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 49599479 - 49599386
Alignment:
| Q |
43 |
ttaataaagtgagttaacactaaactatgacttagctgaagtgaacatatttgatatttcattcgatggtgttataggatacaaagcacttgcacaga |
140 |
Q |
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| T |
49599479 |
ttaataaagtgagtgaacactgagctatgacttatttga----aacatatttgatatttcattcgatggtgttataggctacaaagcacttgcacaga |
49599386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 7228270 - 7228403
Alignment:
| Q |
86 |
aacatatttgatatttcattcgatggtgttataggatacaaagcacttgcacagaaacaggagaccgcatataataataatttaagaaaaataaaagtga |
185 |
Q |
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| T |
7228270 |
aacatatttgatatttcatttgatggtgttataggctacaaagcacttgcacagacactggacacaaca-ctgataataatttaag-aaaatgaaagtga |
7228367 |
T |
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| Q |
186 |
ttttatacaatacgtgtcagtgttggatcctgactttg |
223 |
Q |
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||| | |||| ||||||||||||||| ||||||||| |
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| T |
7228368 |
tttagtgcaat--gtgtcagtgttggatactgactttg |
7228403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 8556556 - 8556649
Alignment:
| Q |
43 |
ttaataaagtgagttaacactaaactatgacttagctgaagtgaacatatttgatatttcattcgatggtgttataggatacaaagcacttgcacaga |
140 |
Q |
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| T |
8556556 |
ttaataaagtgaattaacactaagctatgacttatttaaa----acatatttgatatttcattcgatggtgttataggttaaaaagcacttgcacaga |
8556649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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