View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_22 (Length: 225)
Name: NF18878_high_22
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 34068666 - 34068482
Alignment:
| Q |
19 |
aatattttattcacctttatttaatttagttttcccgcatttcaactcattccattcttggtcaaaaaaataaagtcattccattcgagttcgacagttn |
118 |
Q |
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| T |
34068666 |
aatattttattcacctttatttaatttagttttcccgcatttcaactcattccattcttggtcaaaaaaataaagtcattccat------tcgacagtt- |
34068574 |
T |
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| Q |
119 |
nnnnnnnncaaaatacatttcattctactggtttctctgttgtagccacgtgtttttcccaacccctctccttcttcatgatccatcttcct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34068573 |
aaaaaaaacaaaatacatttcattctactggtttctctgttgtagccacgtgtttttcccaacccctctccttcttcatgatccatcttcct |
34068482 |
T |
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