View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_3 (Length: 544)
Name: NF18878_high_3
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 4 - 525
Target Start/End: Complemental strand, 898663 - 898144
Alignment:
| Q |
4 |
gtcgaagaaaatctcagagagtgacatcaaagacgagatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacata |
103 |
Q |
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| T |
898663 |
gtcgaacaaaatctcagagagtgacatcaaagacgagatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacata |
898564 |
T |
|
| Q |
104 |
ggctagtaggaccaaggtttcaatgattcagaagagacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggg |
203 |
Q |
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| T |
898563 |
ggctagtaggaccaaggtttcaatgattcagaagagacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggg |
898464 |
T |
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| Q |
204 |
gtggtattggcacctctctatgtcaaaattcaggtaaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctcta |
303 |
Q |
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| T |
898463 |
gtggtattggcacctct--atgtcaaaattcaggtaaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctcta |
898366 |
T |
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| Q |
304 |
ttgggattgaaatctggacaaaggttaataatttcgtctatgatggtttgaggtagctgagtatagagggtttcaaaattaagagtgctacattttgttt |
403 |
Q |
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| T |
898365 |
ttgggattgaaatctggacaaaggttaataatttcgtctatgatggtttgaggtagctgagtatagagggtttcaaaattaagagtgctacattttgttt |
898266 |
T |
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| Q |
404 |
ttgatccctagagaatatcaactatcgatgagttgaacaatgcctttagttttgggtatagcgaaagagggatcatcaaaatttaccctcactagtgcat |
503 |
Q |
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| T |
898265 |
ttgatcccaacagaatatcaactatcgatgagttgaacaatgcctttagttttgggtatagcgaaagagggatcatcaaaatttaccctcactagtgcat |
898166 |
T |
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| Q |
504 |
tgcaagactttttgaatgtccc |
525 |
Q |
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| T |
898165 |
tgcaagactttttgaatgtccc |
898144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 522
Target Start/End: Complemental strand, 1194609 - 1194549
Alignment:
| Q |
462 |
tagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgt |
522 |
Q |
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| T |
1194609 |
tagcaaaagagggatcatcaaaatttaccctgactagtgcattggaaaactttttgaatgt |
1194549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 522
Target Start/End: Complemental strand, 1183853 - 1183793
Alignment:
| Q |
462 |
tagcgaaagagggatcatcaaaatttaccctcactagtgcattgcaagactttttgaatgt |
522 |
Q |
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| T |
1183853 |
tagcaaaagagggatcatgaaaatttaacctgactaatgcattggaaaactttttgaatgt |
1183793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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