View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_4 (Length: 541)
Name: NF18878_high_4
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 1211536 - 1212036
Alignment:
| Q |
17 |
aattcaaaccccatttttgtatttccttcaccctcattaaggtggcccctaatgtctatcatataaaaagaaaacatgattagagtttttcaagttttta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1211536 |
aattcaaaccccatttttgtatttccttcaccttcattaaggtggcccctaatgtctatcatataaaaagaaaacatgattagagtttttcttgttttta |
1211635 |
T |
|
| Q |
117 |
atatttagtagcagttcaagctatgaaaaatagggaaatttaaagtactcggagcctccactaaagattatcttttaatccaataaaattaaattttgct |
216 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1211636 |
atatttaggagcggttcaagctatgaaaaatagggaaatttaaagtactcggagccgccactaaagattatcttttaatccaataaaattaaattttgct |
1211735 |
T |
|
| Q |
217 |
ataatgtgtttgcaaccacgccattgcttgtaaaatatagaggtttgcatgtaatgttgaattactggtcatttcaatttttcttgttaataagtttttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1211736 |
ataatgtgtttgcaaccacgccattgcttgtaaaatatagaggtttgcatgtaatgttgaattactggtcatttcaatttttcttgttaataagtttttt |
1211835 |
T |
|
| Q |
317 |
ttgttaatcagaatctcctccaagatttgttaggtcatctgctattagatttttattatcgggccatctatcatttatgttcacggtccagatgttcaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | |
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| T |
1211836 |
ttgttaatcagaatctcctccaagatttattaggtcatctgctattagatttttattatcgggtcatctatcatttatgttcacggtcgagatgttcagt |
1211935 |
T |
|
| Q |
417 |
cctagacgtgagagagtgtgattaagagtctcatatcaaataagagatggtctgataatgcatttgtaatcgaggacaatcttcacctcaaaaaaccgga |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
1211936 |
cctagacgtgagagagtgtgattaagagtctcatatcaaataagagatggtatgataatgtatttgtaatcgaggacaatcttcacctcacaaaaccgga |
1212035 |
T |
|
| Q |
517 |
t |
517 |
Q |
| |
|
| |
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|
| T |
1212036 |
t |
1212036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 18894786 - 18895288
Alignment:
| Q |
17 |
aattcaaaccccatttttgtatttccttcaccctcattaaggtggcccctaatgtctatcatataaaaagaaaacatgattagagtttttcaagttttta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18894786 |
aattcaaaccccatttttgtatttccttcaccttcattaaggtggcccctaatgtctatcatataaaaagaaaacatgattagagtttttcttgttttta |
18894885 |
T |
|
| Q |
117 |
atatttagtagcagttcaagctatgaaaaatagggaaatttaaagtactcggagcctccactaaagattatcttttaatccaataaaattaaattttgct |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18894886 |
atatttagtagcggttcaagctatgaaaaatagggaaacttaaagtactcggagccgccactaaagattatcttttaatccaataaaattaaattttgct |
18894985 |
T |
|
| Q |
217 |
ataatgtgtttgcaaccacgccattgcttgtaaaatatagaggtttgcatgtaatgttgaattactggtcatttcaatttttcttgttaataagtttttc |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
18894986 |
ataatgtgtttgcaaccacgccattgcttgtaaaatatagagg-ttgcatgtaatgttgaattactggtcatttcagtttttcttgttaataattttttc |
18895084 |
T |
|
| Q |
317 |
ttgttaatcagaatctcctccaagatttgttaggtcatctgctattagatttttattatcgggccatctatcatttatgttcacggtccagatgttcaat |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| || ||||||||| |
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|
| T |
18895085 |
ttgttaattagaatctcctccaagatttgttaggtcatctgctattagatttctattatcgggtcacctatcatttatgttcacggttcaaatgttcaat |
18895184 |
T |
|
| Q |
417 |
cctagacgtgagagagtgtgattaagagtctcatatcaaataagagatggtctgataatgcatttgtaatcgaggacaatcttcacctcaaaaaaccgga |
516 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||| |
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|
| T |
18895185 |
cctagacgtgaaagagtgtgattaagaggctcatatcaaataagagatggtctgataatgtatttataatcgaggacaatcatcacctcacaaaaccgga |
18895284 |
T |
|
| Q |
517 |
tcat |
520 |
Q |
| |
|
|||| |
|
|
| T |
18895285 |
tcat |
18895288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 186 - 520
Target Start/End: Original strand, 11201572 - 11201905
Alignment:
| Q |
186 |
atcttttaatccaataaaattaaattttgctataatgtgtttgcaaccacgccattgcttgtaaaatatagaggtttgcatgtaatgttgaattactggt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11201572 |
atcttttaatccaataaaattaaattttgctataatgtgtttgcaaccaagccattgcttgtaaaatatagaggtt-gcatgtaatgttgaattactggt |
11201670 |
T |
|
| Q |
286 |
catttcaatttttcttgttaataagtttttcttgttaatcagaatctcctccaagatttgttaggtcatctgctattagatttttattatcgggccatct |
385 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11201671 |
catttcagtttttcttgttaataagtttttcttcttaatcataatcacctctaagatttgttaggtcatctgctattagatttttattatcgggccacct |
11201770 |
T |
|
| Q |
386 |
atcatttatgttcacggtccagatgttcaatcctagacgtgagagagtgtgattaagagtctcatatcaaataagagatggtctgataatgcatttgtaa |
485 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
11201771 |
atcatttatattcacggtctagatgttcagtcctaaacgtgagagagtgtgattaagagtctcatattaaataagagatgatctgataatatatttgtaa |
11201870 |
T |
|
| Q |
486 |
tcgaggacaatcttcacctcaaaaaaccggatcat |
520 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |
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|
| T |
11201871 |
tcgaggacaatcttcacctcacaaaaccgggtcat |
11201905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 30264747 - 30264841
Alignment:
| Q |
323 |
atcagaatctcctccaagatttgttaggtcatctgctattagatttttattatcgggccatctatcatttatgttcacggtccagatgttcaatc |
417 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| ||||||| ||||||||||||| || | ||| | |||||| | ||| ||||||||||||||| |
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|
| T |
30264747 |
atcagagtctcctccaagatttgttggatcacctgctatcagatttttattattggactatccactatttatatccacactccagatgttcaatc |
30264841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 10523115 - 10523260
Alignment:
| Q |
331 |
ctcctccaagatttgttaggtcatctgctattagatttttattatcgggccatctatcatttatgttcacggtccagatgttcaatcctagacgtgagag |
430 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||| | ||| |||||| |||| | | ||||||||| |||| | ||||||| ||||||| |||||| | |
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| T |
10523115 |
ctcctccaagatctgttgggtcacctgctatcaagtttccgttatcgagccacccaccatttatgtccacgcttcagatgtccaatcctgagcgtgaggg |
10523214 |
T |
|
| Q |
431 |
agtgtgattaagagtctcatatcaaataagagatggtctgataatg |
476 |
Q |
| |
|
|||||| | ||||||| || ||| |||||||||||||||| |||| |
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|
| T |
10523215 |
agtgtgttaaagagtcccacatcggataagagatggtctgacaatg |
10523260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 476
Target Start/End: Complemental strand, 25082652 - 25082614
Alignment:
| Q |
438 |
ttaagagtctcatatcaaataagagatggtctgataatg |
476 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
25082652 |
ttaagagtctcatatcagataagagatggtctgacaatg |
25082614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 10221704 - 10221652
Alignment:
| Q |
451 |
atcaaataagagatggtctgataatgcatttgtaatcgaggacaatcttcacc |
503 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||| |||||||||||||||| |
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|
| T |
10221704 |
atcaaataagagatggtctgaaaatgtgtttataagtgaggacaatcttcacc |
10221652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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