View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18878_high_6 (Length: 465)
Name: NF18878_high_6
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 46976461 - 46976910
Alignment:
| Q |
1 |
acctatagatgtaatttctaaatcttttagaaaatgcttgcaagagtagatttattcatactagactttctcaacaaaggttcttaaaagagcatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46976461 |
acctatagatgtaatttctaaatcttttagaaaatgcttgcaagagtagatttattcatactagactttctcaacaaaggttcttaaaagagcacatcca |
46976560 |
T |
|
| Q |
101 |
aagtggtaaggcatgtcgctctaaaaatcaacaatagcagaatcctgtatgggaacgagagaaatctataccttttctcatacgtccaacagataagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46976561 |
aagtggtaaggcatgtcgctctaaaaatcaacaatagcagaatcctgtatgggaacgagagaaatctataccttttctcatacgtccaacagataagata |
46976660 |
T |
|
| Q |
201 |
ttctatatgactgattactctaagatacaactcatattatgagatattttccatattttgtaacaatctcttgtagtatgggtcgccatttttcattttc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46976661 |
ttctatattactgattactctaagatacaactcatattatgagatattttccatattttgtaacaatctcttgtagtatgggtcgccatttttcattttc |
46976760 |
T |
|
| Q |
301 |
cctttgttccagatatcttggatcaagaatgagctaactgaaatggaagtcatcacatcaacacgagaaggtgatttgaccgatgaacttcttcccaaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46976761 |
cctttgttccagatatcttggatcaagaatgagctaactgaaatggaagtcatcacatcaacacgagaaggtgatttgaccgaggaacttcttcccaaaa |
46976860 |
T |
|
| Q |
401 |
gacattctctatttgttcatgaattcaggtaatttactagacaccctcat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46976861 |
gacattctctatttgttcatgaattcaggtaatttactagacaccctcat |
46976910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University