View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_high_7 (Length: 429)
Name: NF18878_high_7
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 32777440 - 32777037
Alignment:
| Q |
10 |
attatacttcggtaattttatcaagagaatgtatggaaccacatccaaccactctaaacgcgtatacatgagttttcaccgtgatttttagaagctaggg |
109 |
Q |
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| T |
32777440 |
attatacttcgataattttatcaagagaatgtttggaaccacgtccaacaactccaaacatgtatacatgagttttcaccgtgatttttaaaagctagaa |
32777341 |
T |
|
| Q |
110 |
tttagatttacaatacagttgagcgttagttgtagatcattagatt--aagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaa |
207 |
Q |
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| T |
32777340 |
tttagatttacaatacagttgagcgttagtcgtagatcattagattaaaagttataaatgtatctctcctagtctaacgatttacaaccaactgtaccaa |
32777241 |
T |
|
| Q |
208 |
agttgaatatagagaatctatttttaaatgctgtgtttatttta--ttttttctgtctaaattatcaaaatatcttcttgcaatttgaatatacaaatgg |
305 |
Q |
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|||| | || | | | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777240 |
agttataaat-gttactgatttttaaaatgctgtgtttattttattttttttctgtctaaattatcaaaatatcttcttgcaatttgaatatacaaatgg |
32777142 |
T |
|
| Q |
306 |
attaaaacatttttctggataggnnnnnnnncgtgtgtggcttctattgatcattggttctgcaatccatgtgccatctgtcaaatttatggatgccaga |
405 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32777141 |
attaaaaca-ttttctggataggttttttttcgtgtgtggcttctattgatcattggttctgcaatccatgtgccatctgtcaaatttatgggtgccaga |
32777043 |
T |
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| Q |
406 |
atgtcc |
411 |
Q |
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|||||| |
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| T |
32777042 |
atgtcc |
32777037 |
T |
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