View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18878_low_1 (Length: 751)

Name: NF18878_low_1
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18878_low_1
NF18878_low_1
[»] chr4 (11 HSPs)
chr4 (227-741)||(47292305-47292819)
chr4 (18-219)||(47291788-47291991)
chr4 (284-505)||(56209616-56209838)
chr4 (287-429)||(45863436-45863579)
chr4 (296-429)||(45883384-45883518)
chr4 (390-499)||(54303383-54303492)
chr4 (152-211)||(47288412-47288472)
chr4 (616-691)||(45862519-45862594)
chr4 (617-730)||(56209347-56209461)
chr4 (466-499)||(45863240-45863273)
chr4 (466-499)||(45882639-45882672)
[»] chr8 (2 HSPs)
chr8 (289-504)||(7973526-7973742)
chr8 (577-730)||(7962518-7962669)
[»] chr5 (3 HSPs)
chr5 (650-730)||(35803176-35803256)
chr5 (284-459)||(10520217-10520393)
chr5 (277-340)||(35803584-35803647)
[»] chr2 (1 HSPs)
chr2 (285-429)||(24348395-24348540)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 227 - 741
Target Start/End: Original strand, 47292305 - 47292819
Alignment:
Q  227 cagcgtcttgcaaattgatttgagcggccagatacctgagcaccatggtgaggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatat 326  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292305 cagcgtcttgcaaattgatttgagcggccagatatctgagcaccatggtgaggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatat 47292404  T
Q  327 gatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaactcatgaaattcgaagggaaatcatgaatttcagaaaatc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47292405 gatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggttgggctaaactcatgaaattcgaaaggaaatcatgaatttcagaaaatc 47292504  T
Q  427 aggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgtgcatgtgaagaagtttatacgtctcctgaagctgatcct 526  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292505 aggaaaacttattgttgcttatgtccctgcaataggaggaaaagaatattacattgcttgtgcatgtgaagaagtttatacgtctcctgaagctgatcct 47292604  T
Q  527 gtttccttgtttaaaggtggtctcaattctgtaattccagaagttgtagcacttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatag 626  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47292605 gtttccttatttaaaggtggtctcaattctgtaattccagaagttgtagcacttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatag 47292704  T
Q  627 tgaaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcata 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  47292705 tgaaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtatcttcttctacaagaaagagaagagaagatattgaaaacttcata 47292804  T
Q  727 aatggagatgatgtc 741  Q
    |||||||||||||||    
T  47292805 aatggagatgatgtc 47292819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 47291788 - 47291991
Alignment:
Q  18 aatattgacatggatatactttattgtatgacctcaacgtacattctaccaataactacagtagtcatat--gttgtcagaatcaagagagcaatgcaca 115  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  47291788 aatattgacatggatatactttaatgtatgacctcaacatacattctaccaataactacagtagtcatatatgttgtcagaatcaagagagcaatgcaca 47291887  T
Q  116 ccttcacaacacaaaaacaatatatgtaaggtgagaagaaaccctaagctaacgctcatacactattcttttcctttccaagccctaatcgactgatact 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47291888 ccttcacaacacaaaaacaatatatgtaaggtgagaagaaaccctaagctaacgctcatacactattcttttcctttccaagccctaatcgactgatact 47291987  T
Q  216 gcac 219  Q
    ||||    
T  47291988 gcac 47291991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 284 - 505
Target Start/End: Complemental strand, 56209838 - 56209616
Alignment:
Q  284 atctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggct 383  Q
    ||||||||||| | ||||||||||| |||||||||| || |||||||||||||||||||| || | ||||| |||| ||  ||||||||| |||||||||    
T  56209838 atctctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggct 56209739  T
Q  384 aaactc-atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattg 482  Q
    |||||| |||||||||||||| ||||| | |||||||||||||| || |||||| |||| ||||||||| || |||| ||||  ||||||||||||||||    
T  56209738 aaactcgatgaaattcgaaggcaaatcttaaatttcagaaaatctggtaaacttgttgtggcttatgttacttcaattggagttaaagaatattacattg 56209639  T
Q  483 cttgtgcatgtgaagaagtttat 505  Q
    |||||| |||||||||| |||||    
T  56209638 cttgtgtatgtgaagaaatttat 56209616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 45863579 - 45863436
Alignment:
Q  287 tctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaa 386  Q
    |||||| | |||||| ||||||||||||||||| || ||||||| |||||||||||| || | |||||| ||| ||  ||||||||| ||||||||||||    
T  45863579 tctgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaa 45863480  T
Q  387 -ctcatgaaattcgaagggaaatcatgaatttcagaaaatcagg 429  Q
     || |||||||||||||  ||||| |||||||||||||||||||    
T  45863479 gctgatgaaattcgaagacaaatcttgaatttcagaaaatcagg 45863436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 296 - 429
Target Start/End: Complemental strand, 45883518 - 45883384
Alignment:
Q  296 aatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaactc-atgaa 394  Q
    |||||||||||||||||||||||| || ||||||| |||||||||||  |||| |||||| ||| |   ||||||||||||||||||||||||| |||||    
T  45883518 aatttgcgataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcgatgaa 45883419  T
Q  395 attcgaagggaaatcatgaatttcagaaaatcagg 429  Q
    ||||||||  | ||| | |||||||||||||||||    
T  45883418 attcgaagacagatcttaaatttcagaaaatcagg 45883384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 499
Target Start/End: Original strand, 54303383 - 54303492
Alignment:
Q  390 atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgtgc 489  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||| |||| ||| |||| |||||| |||||| | ||| ||||    
T  54303383 atgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgaaattggagtaaaagagtattacgtcgctagtgc 54303482  T
Q  490 atgtgaagaa 499  Q
    |||| |||||    
T  54303483 atgtaaagaa 54303492  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 47288412 - 47288472
Alignment:
Q  152 agaaaccctaagctaacgctcatacactattcttttcctttcc-aagccctaatcgactga 211  Q
    |||| ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  47288412 agaagccctaagctcacgctcatgcactattcttttcctttccaaagccctaatcgactga 47288472  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 616 - 691
Target Start/End: Complemental strand, 45862594 - 45862519
Alignment:
Q  616 gaagatcatagtgaaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtgtcttcttcta 691  Q
    ||||||||| |||| ||| ||||||| || | ||| ||||| |||||||||||||||||||| || ||||||||||    
T  45862594 gaagatcatcgtgagatgctgactgcattactggataatatctattcaaattggctggataaagtctcttcttcta 45862519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 617 - 730
Target Start/End: Complemental strand, 56209461 - 56209347
Alignment:
Q  617 aagatcatagtgaaatgatgactgctttgcaggacaatatttattcaaattggctggataaggtgtcttcttctacaagaaagaaaagag-aagatattg 715  Q
    |||| ||| |||| ||| ||||||| |||  ||| ||||| |||||||||||||| ||||| || |||||| | | | ||||||||| || |||||||||    
T  56209461 aagaacatcgtgagatgctgactgcattgttggataatatctattcaaattggctcgataaagtctcttctgcaagaggaaagaaaatagaaagatattg 56209362  T
Q  716 aaaacttcataaatg 730  Q
    | || ||||||||||    
T  56209361 acaatttcataaatg 56209347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 45863273 - 45863240
Alignment:
Q  466 aaaagaatattacattgcttgtgcatgtgaagaa 499  Q
    |||| |||||||||||||||||||||||||||||    
T  45863273 aaaataatattacattgcttgtgcatgtgaagaa 45863240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 499
Target Start/End: Complemental strand, 45882672 - 45882639
Alignment:
Q  466 aaaagaatattacattgcttgtgcatgtgaagaa 499  Q
    ||||||||||||||||||||| ||||||||||||    
T  45882672 aaaagaatattacattgcttgcgcatgtgaagaa 45882639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 289 - 504
Target Start/End: Complemental strand, 7973742 - 7973526
Alignment:
Q  289 tgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggctaaact 388  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| | ||  |||||||| |||||| ||| |||| ||||||||    
T  7973742 tgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaact 7973643  T
Q  389 c-atgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaataggaggaaaagaatattacattgcttgt 487  Q
    | ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||  ||| ||| || ||||||||||||||||| | ||||    
T  7973642 cgatgaaattcaaagggaaatcataaatttcagaaaatcaggtaaacttattgttgcttatgtcgctgtaatgggtggaaaagaatattacataggttgt 7973543  T
Q  488 gcatgtgaagaagttta 504  Q
    |||||||||||||||||    
T  7973542 gcatgtgaagaagttta 7973526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 577 - 730
Target Start/End: Complemental strand, 7962669 - 7962518
Alignment:
Q  577 acttggtgaatataaaagggtagtagaggtgaacaaatcgaagatcatagtgaaatgatgactgctttgcaggacaatatttattcaaattggctggata 676  Q
    ||||||| |||||| | ||||||  ||||| |||||||| ||||| || |||| | || |||||| |||||||||| |||||||||||||||||||||||    
T  7962669 acttggtaaatatagatgggtag--gaggtcaacaaatcaaagattatcgtgagacgacgactgcattgcaggacagtatttattcaaattggctggata 7962572  T
Q  677 aggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcataaatg 730  Q
    |||| ||||||||||   ||||||||| ||||||||||||||| ||||||||||    
T  7962571 aggtctcttcttctattggaaagaaaaaagaagatattgaaaatttcataaatg 7962518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 650 - 730
Target Start/End: Complemental strand, 35803256 - 35803176
Alignment:
Q  650 acaatatttattcaaattggctggataaggtgtcttcttctacaagaaagaaaagagaagatattgaaaacttcataaatg 730  Q
    ||||||| |||||||||||||||||||| || |||||||||| | | ||||||||||||||  || |||||||||||||||    
T  35803256 acaatatctattcaaattggctggataaagtctcttcttctagagggaagaaaagagaagaagttcaaaacttcataaatg 35803176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 459
Target Start/End: Original strand, 10520217 - 10520393
Alignment:
Q  284 atctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggct 383  Q
    |||||| |||| |||||||| |||||| |||||||| |||||||||| | ||||||| || || | |||||||||  | | ||||| ||| |||||||||    
T  10520217 atctcttcctcaaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttgggct 10520316  T
Q  384 aaac-tcatgaaattcgaagggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgttcctgcaat 459  Q
    |||| | |||| |||| |||| ||||  | |||||||||||||| || ||| |  |||| |||||||| ||| ||||    
T  10520317 aaacttgatgagattcaaaggcaaattttaaatttcagaaaatcggggaaaatggttgtggcttatgtcccttcaat 10520393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 35803647 - 35803584
Alignment:
Q  277 aggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttc 340  Q
    |||||| ||||||||||  |||||||||| |||| ||||||||||| ||||||| |||||||||    
T  35803647 aggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttc 35803584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 429
Target Start/End: Original strand, 24348395 - 24348540
Alignment:
Q  285 tctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgcggttgggcta 384  Q
    ||||| |||| ||| ||||| ||||| |||||||| || ||||||| ||| |||||||  || | ||| |||||| || ||||| |||| || |||| ||    
T  24348395 tctctacctcaaatatgcgagaattttttgaaagcagcctatgatcctcgaatttctggggtctatctccatattgatagtttagattgtgggtggggta 24348494  T
Q  385 aactc-atgaaattcgaagggaaatcatgaatttcagaaaatcagg 429  Q
    || |  | |||||||||||| | ||| ||||||||| |||||||||    
T  24348495 aagtagaagaaattcgaaggcacatcttgaatttcaaaaaatcagg 24348540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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