View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18878_low_10 (Length: 354)
Name: NF18878_low_10
Description: NF18878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18878_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 37804293 - 37804588
Alignment:
| Q |
4 |
atactattaggtgattagatggtagttctaccaagagatctttaagataacacccaaagagtaaaactcaatcatctattctcatcccttcaactctatt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37804293 |
atactattaggtgattagatggtagttctaccaagagatctttaagataacacccaaagagtaaaactcaatcatctattctcatcccttcaactctatt |
37804392 |
T |
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| Q |
104 |
actcaatgataattttattagattatatgtcaagacctagaccatatgtgtccttaaacatctctacatcatttttaatta---------------aact |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37804393 |
actcaatgataattttattagattatatgtcaagacctagaccatatgtgtccttaaacatctctacatcatttttaattaaacaattataacaacaact |
37804492 |
T |
|
| Q |
189 |
ttataatatatttaacatgtttatcctttttcgatccttgannnnnnnattaccagttagtgtatctctgtaatcctttttaattatatgtgtgtg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37804493 |
ttataatatatttaacatgtttatcctttttcgatccttgatttttttattaccagttagtgtatctctgtaatcctttttaattatatgtgtgtg |
37804588 |
T |
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